miRNA display CGI


Results 1 - 11 of 11 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27315 3' -45.3 NC_005856.1 + 35995 0.66 0.999845
Target:  5'- aCCu-GCGCCCAUUcagacCAGUUGGCa- -3'
miRNA:   3'- -GGuuCGUGGGUAAaac--GUUAACUGcu -5'
27315 3' -45.3 NC_005856.1 + 15509 0.66 0.999911
Target:  5'- gCC-AGCACCCcuggcaUUGCGGUuucaccguaUGGCGGg -3'
miRNA:   3'- -GGuUCGUGGGuaa---AACGUUA---------ACUGCU- -5'
27315 3' -45.3 NC_005856.1 + 32736 0.66 0.999845
Target:  5'- aCCu-GCGCCCAUUcagacCAGUUGGCa- -3'
miRNA:   3'- -GGuuCGUGGGUAAaac--GUUAACUGcu -5'
27315 3' -45.3 NC_005856.1 + 73639 0.67 0.999139
Target:  5'- cUCAAGCAUCUuUUccGCAAUUGcCGAc -3'
miRNA:   3'- -GGUUCGUGGGuAAaaCGUUAACuGCU- -5'
27315 3' -45.3 NC_005856.1 + 78449 0.67 0.999439
Target:  5'- cCCaAAGCACCCGgcaauauccucugucGCGGUaUGACGAc -3'
miRNA:   3'- -GG-UUCGUGGGUaaaa-----------CGUUA-ACUGCU- -5'
27315 3' -45.3 NC_005856.1 + 67218 0.68 0.998387
Target:  5'- gCCAcugauugcAGCGCCa--UUUGCAAUaaUGGCGGa -3'
miRNA:   3'- -GGU--------UCGUGGguaAAACGUUA--ACUGCU- -5'
27315 3' -45.3 NC_005856.1 + 21471 0.69 0.997625
Target:  5'- gCGAGCGCCgAUcaUUUGCAugGUgccgcccuggcUGACGAu -3'
miRNA:   3'- gGUUCGUGGgUA--AAACGU--UA-----------ACUGCU- -5'
27315 3' -45.3 NC_005856.1 + 13317 0.69 0.996583
Target:  5'- aUAAGCGCCUggccagGUUUgGCA-UUGACGAa -3'
miRNA:   3'- gGUUCGUGGG------UAAAaCGUuAACUGCU- -5'
27315 3' -45.3 NC_005856.1 + 8040 0.7 0.99434
Target:  5'- -gGAGCACCCAUUUcGCAucaucaaGCGAc -3'
miRNA:   3'- ggUUCGUGGGUAAAaCGUuaac---UGCU- -5'
27315 3' -45.3 NC_005856.1 + 61971 0.71 0.986184
Target:  5'- -uGAGCGCCUGgcUUUGCAgucagcuGUUGGCGAg -3'
miRNA:   3'- ggUUCGUGGGUa-AAACGU-------UAACUGCU- -5'
27315 3' -45.3 NC_005856.1 + 11553 1.13 0.01104
Target:  5'- aCCAAGCACCCAUUUUGCAAUUGACGAc -3'
miRNA:   3'- -GGUUCGUGGGUAAAACGUUAACUGCU- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.