miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27315 5' -55.5 NC_005856.1 + 11587 1.13 0.001326
Target:  5'- gCGCCGUCACGGCGAUCCGGGUAAACCg -3'
miRNA:   3'- -GCGGCAGUGCCGCUAGGCCCAUUUGG- -5'
27315 5' -55.5 NC_005856.1 + 54090 0.66 0.882496
Target:  5'- aG-CGUCAC-GCGuUCCGGGauuuGACCa -3'
miRNA:   3'- gCgGCAGUGcCGCuAGGCCCau--UUGG- -5'
27315 5' -55.5 NC_005856.1 + 39439 0.66 0.851431
Target:  5'- cCGCCcgGUgAUGGUGAUCUuaaaGGGUAguuuucuGACCu -3'
miRNA:   3'- -GCGG--CAgUGCCGCUAGG----CCCAU-------UUGG- -5'
27315 5' -55.5 NC_005856.1 + 77524 0.67 0.818675
Target:  5'- -uCUGaCACGGUGAUgCuGGUGGACCg -3'
miRNA:   3'- gcGGCaGUGCCGCUAgGcCCAUUUGG- -5'
27315 5' -55.5 NC_005856.1 + 90913 0.67 0.815156
Target:  5'- gCGCUauGUUGCGuCGGUCCGGGgccgauguucuggAAACCa -3'
miRNA:   3'- -GCGG--CAGUGCcGCUAGGCCCa------------UUUGG- -5'
27315 5' -55.5 NC_005856.1 + 29445 0.68 0.753555
Target:  5'- cCGCCGaUCGCGcGCGcgCCGcucUGGGCCa -3'
miRNA:   3'- -GCGGC-AGUGC-CGCuaGGCcc-AUUUGG- -5'
27315 5' -55.5 NC_005856.1 + 88230 0.7 0.676827
Target:  5'- aGCCGcuacgGCGGCcugccgggaaugucuGAUCCGGGUAGGgCa -3'
miRNA:   3'- gCGGCag---UGCCG---------------CUAGGCCCAUUUgG- -5'
27315 5' -55.5 NC_005856.1 + 69752 0.66 0.860123
Target:  5'- uGCCgGUUACGGU--UCCGGccAGGCCu -3'
miRNA:   3'- gCGG-CAGUGCCGcuAGGCCcaUUUGG- -5'
27315 5' -55.5 NC_005856.1 + 79038 0.67 0.835836
Target:  5'- -uCCGUCGC-GCaGGUCUGGGUucuuuGCCa -3'
miRNA:   3'- gcGGCAGUGcCG-CUAGGCCCAuu---UGG- -5'
27315 5' -55.5 NC_005856.1 + 21480 0.67 0.809827
Target:  5'- -aUCGUCACGGCGAgcgCCGaucauuugcauGGU--GCCg -3'
miRNA:   3'- gcGGCAGUGCCGCUa--GGC-----------CCAuuUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.