miRNA display CGI


Results 1 - 16 of 16 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27316 3' -51.5 NC_005856.1 + 22177 0.66 0.960685
Target:  5'- ---cAGCACAAUGGgggUAACCGCGAguUUCa -3'
miRNA:   3'- guucUCGUGUUGCU---GUUGGCGCU--GAG- -5'
27316 3' -51.5 NC_005856.1 + 36053 0.66 0.956778
Target:  5'- --cGGGCGCAugGGC-ACCGCucgugccACUCc -3'
miRNA:   3'- guuCUCGUGUugCUGuUGGCGc------UGAG- -5'
27316 3' -51.5 NC_005856.1 + 32678 0.66 0.956778
Target:  5'- --cGGGCGCAugGGC-ACCGCucgugccACUCc -3'
miRNA:   3'- guuCUCGUGUugCUGuUGGCGc------UGAG- -5'
27316 3' -51.5 NC_005856.1 + 93845 0.67 0.933312
Target:  5'- ---cGGCAgAACGACAACCG-GGCg- -3'
miRNA:   3'- guucUCGUgUUGCUGUUGGCgCUGag -5'
27316 3' -51.5 NC_005856.1 + 84293 0.67 0.924379
Target:  5'- aCAGGAGCugAaaauaugaacACGGCAuucaaaaucauuaugGCCGCGAUc- -3'
miRNA:   3'- -GUUCUCGugU----------UGCUGU---------------UGGCGCUGag -5'
27316 3' -51.5 NC_005856.1 + 17900 0.68 0.915991
Target:  5'- --cGAGguCAGCGGCAACCuggcgggauuuaGCGGCg- -3'
miRNA:   3'- guuCUCguGUUGCUGUUGG------------CGCUGag -5'
27316 3' -51.5 NC_005856.1 + 54889 0.68 0.909673
Target:  5'- ---uAGUuuagaAGCGACGACCGCGACg- -3'
miRNA:   3'- guucUCGug---UUGCUGUUGGCGCUGag -5'
27316 3' -51.5 NC_005856.1 + 7308 0.68 0.889117
Target:  5'- ---aAGCACGGCGACAACUGa-GCUUa -3'
miRNA:   3'- guucUCGUGUUGCUGUUGGCgcUGAG- -5'
27316 3' -51.5 NC_005856.1 + 77726 0.69 0.874117
Target:  5'- uGAuGGCACAGgGAUcaaAGCCGCGACa- -3'
miRNA:   3'- gUUcUCGUGUUgCUG---UUGGCGCUGag -5'
27316 3' -51.5 NC_005856.1 + 41731 0.69 0.866244
Target:  5'- --cGAGCACGAUGAguauugaccuUGAUCGCGuACUCa -3'
miRNA:   3'- guuCUCGUGUUGCU----------GUUGGCGC-UGAG- -5'
27316 3' -51.5 NC_005856.1 + 31107 0.69 0.848936
Target:  5'- gCAGGAGCGCAAUaGCAACUggagcuaauuccuGUGugUCa -3'
miRNA:   3'- -GUUCUCGUGUUGcUGUUGG-------------CGCugAG- -5'
27316 3' -51.5 NC_005856.1 + 15011 0.7 0.840342
Target:  5'- aAAGAuaGCGCGACGGCGaacggcuACCGCGAg-- -3'
miRNA:   3'- gUUCU--CGUGUUGCUGU-------UGGCGCUgag -5'
27316 3' -51.5 NC_005856.1 + 66954 0.71 0.765636
Target:  5'- gGAGuGGCACAACGACGccgaCGCGugUUu -3'
miRNA:   3'- gUUC-UCGUGUUGCUGUug--GCGCugAG- -5'
27316 3' -51.5 NC_005856.1 + 16922 0.73 0.67059
Target:  5'- ---uGGUACggUGAUGACCGCGACUg -3'
miRNA:   3'- guucUCGUGuuGCUGUUGGCGCUGAg -5'
27316 3' -51.5 NC_005856.1 + 20639 0.74 0.616016
Target:  5'- ---cAGCGCAAUGACAAgCGCGGCa- -3'
miRNA:   3'- guucUCGUGUUGCUGUUgGCGCUGag -5'
27316 3' -51.5 NC_005856.1 + 18712 1.11 0.003183
Target:  5'- aCAAGAGCACAACGACAACCGCGACUCg -3'
miRNA:   3'- -GUUCUCGUGUUGCUGUUGGCGCUGAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.