miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27318 5' -56 NC_005856.1 + 18029 0.66 0.828647
Target:  5'- aUCGCCGCUAA----AUCCCgCCAGguugcCGCu -3'
miRNA:   3'- -GGCGGCGGUUuguaUAGGG-GGUC-----GCG- -5'
27318 5' -56 NC_005856.1 + 38740 0.66 0.837172
Target:  5'- gUGCCGCCG---GUAgUCUCCAGUGUg -3'
miRNA:   3'- gGCGGCGGUuugUAUaGGGGGUCGCG- -5'
27318 5' -56 NC_005856.1 + 28918 0.66 0.819934
Target:  5'- cCCGCaggGgCAAugGUAUCgcgCCaCCAGUGCg -3'
miRNA:   3'- -GGCGg--CgGUUugUAUAG---GG-GGUCGCG- -5'
27318 5' -56 NC_005856.1 + 15873 0.66 0.83208
Target:  5'- -gGCCGCCGGGCAUAgUgCUgaacaaaucgaacagCAGCGCc -3'
miRNA:   3'- ggCGGCGGUUUGUAUaGgGG---------------GUCGCG- -5'
27318 5' -56 NC_005856.1 + 85165 0.66 0.819934
Target:  5'- uUCGCCG-UAGAUggAUUCCCacaGGCGCu -3'
miRNA:   3'- -GGCGGCgGUUUGuaUAGGGGg--UCGCG- -5'
27318 5' -56 NC_005856.1 + 45270 0.67 0.764206
Target:  5'- aC-CCGCgAAAUAUgAUCCCCUgacauggacGGCGCa -3'
miRNA:   3'- gGcGGCGgUUUGUA-UAGGGGG---------UCGCG- -5'
27318 5' -56 NC_005856.1 + 32699 0.67 0.792754
Target:  5'- cCCGCCGCgaaCGGAUAUGUa--CgGGCGCa -3'
miRNA:   3'- -GGCGGCG---GUUUGUAUAgggGgUCGCG- -5'
27318 5' -56 NC_005856.1 + 13694 0.67 0.793684
Target:  5'- aUGCCGCgCAGcGCAUcaagguuuucaaagCCCaCCAGCGCc -3'
miRNA:   3'- gGCGGCG-GUU-UGUAua------------GGG-GGUCGCG- -5'
27318 5' -56 NC_005856.1 + 36032 0.67 0.792754
Target:  5'- cCCGCCGCgaaCGGAUAUGUa--CgGGCGCa -3'
miRNA:   3'- -GGCGGCG---GUUUGUAUAgggGgUCGCG- -5'
27318 5' -56 NC_005856.1 + 9847 0.67 0.774817
Target:  5'- aCCGuCCGCCAuuucccguccggacgGuACAUGcgcagagcuuuacuUCCCCCuucccuGCGCa -3'
miRNA:   3'- -GGC-GGCGGU---------------U-UGUAU--------------AGGGGGu-----CGCG- -5'
27318 5' -56 NC_005856.1 + 27725 0.67 0.773858
Target:  5'- aCCGUCGCCAGACGcgccguaCCCCAucuGuUGCa -3'
miRNA:   3'- -GGCGGCGGUUUGUauag---GGGGU---C-GCG- -5'
27318 5' -56 NC_005856.1 + 2217 0.67 0.773858
Target:  5'- aCCGCCguaucGCUAAACAgaaagagcgCCCaCCAGCcaGCa -3'
miRNA:   3'- -GGCGG-----CGGUUUGUaua------GGG-GGUCG--CG- -5'
27318 5' -56 NC_005856.1 + 78129 0.67 0.764206
Target:  5'- cCCGgCGgCGAGC--GUCacaaCCCAGCGUa -3'
miRNA:   3'- -GGCgGCgGUUUGuaUAGg---GGGUCGCG- -5'
27318 5' -56 NC_005856.1 + 27991 0.67 0.75443
Target:  5'- aUCGCUucCCGGACAUuaCCCCgGGCGUu -3'
miRNA:   3'- -GGCGGc-GGUUUGUAuaGGGGgUCGCG- -5'
27318 5' -56 NC_005856.1 + 84524 0.67 0.792754
Target:  5'- gCCGCgcucuuucacuuCGCCuuuCAUgcAUCCCCCuuacccauGCGCg -3'
miRNA:   3'- -GGCG------------GCGGuuuGUA--UAGGGGGu-------CGCG- -5'
27318 5' -56 NC_005856.1 + 83366 0.68 0.734549
Target:  5'- gCCGCCGCCcgGAAUugGUCCgUCgaguugagugGGCGCa -3'
miRNA:   3'- -GGCGGCGG--UUUGuaUAGGgGG----------UCGCG- -5'
27318 5' -56 NC_005856.1 + 44685 0.68 0.734549
Target:  5'- -aGCCaGCCGGAUGUGUgCCgCCAGCu- -3'
miRNA:   3'- ggCGG-CGGUUUGUAUAgGG-GGUCGcg -5'
27318 5' -56 NC_005856.1 + 43267 0.68 0.711228
Target:  5'- aCCaCCGCguAGCAuuccuacaaguuucUuugCCCCCAGUGCg -3'
miRNA:   3'- -GGcGGCGguUUGU--------------Aua-GGGGGUCGCG- -5'
27318 5' -56 NC_005856.1 + 64758 0.68 0.744542
Target:  5'- gCCGCCGCCGGugGgaugaaaaCaCCUGGUGCc -3'
miRNA:   3'- -GGCGGCGGUUugUauag----G-GGGUCGCG- -5'
27318 5' -56 NC_005856.1 + 13578 0.68 0.743547
Target:  5'- aCGCCGCCAGu--UGUUCUUCaguaaguGGCGCa -3'
miRNA:   3'- gGCGGCGGUUuguAUAGGGGG-------UCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.