Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27318 | 5' | -56 | NC_005856.1 | + | 2217 | 0.67 | 0.773858 |
Target: 5'- aCCGCCguaucGCUAAACAgaaagagcgCCCaCCAGCcaGCa -3' miRNA: 3'- -GGCGG-----CGGUUUGUaua------GGG-GGUCG--CG- -5' |
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27318 | 5' | -56 | NC_005856.1 | + | 2935 | 0.73 | 0.449449 |
Target: 5'- aCGCCGCCGcGAUAUGgaaCUCCAGCuGCu -3' miRNA: 3'- gGCGGCGGU-UUGUAUag-GGGGUCG-CG- -5' |
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27318 | 5' | -56 | NC_005856.1 | + | 9847 | 0.67 | 0.774817 |
Target: 5'- aCCGuCCGCCAuuucccguccggacgGuACAUGcgcagagcuuuacuUCCCCCuucccuGCGCa -3' miRNA: 3'- -GGC-GGCGGU---------------U-UGUAU--------------AGGGGGu-----CGCG- -5' |
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27318 | 5' | -56 | NC_005856.1 | + | 9942 | 0.71 | 0.568458 |
Target: 5'- gUCGUCGauuucaaaaCAAACAgUGUUCCCCAGgGCg -3' miRNA: 3'- -GGCGGCg--------GUUUGU-AUAGGGGGUCgCG- -5' |
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27318 | 5' | -56 | NC_005856.1 | + | 13578 | 0.68 | 0.743547 |
Target: 5'- aCGCCGCCAGu--UGUUCUUCaguaaguGGCGCa -3' miRNA: 3'- gGCGGCGGUUuguAUAGGGGG-------UCGCG- -5' |
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27318 | 5' | -56 | NC_005856.1 | + | 13694 | 0.67 | 0.793684 |
Target: 5'- aUGCCGCgCAGcGCAUcaagguuuucaaagCCCaCCAGCGCc -3' miRNA: 3'- gGCGGCG-GUU-UGUAua------------GGG-GGUCGCG- -5' |
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27318 | 5' | -56 | NC_005856.1 | + | 14318 | 0.73 | 0.458873 |
Target: 5'- uUGCCGCCGGGCGcGUag-CCAGCGCa -3' miRNA: 3'- gGCGGCGGUUUGUaUAgggGGUCGCG- -5' |
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27318 | 5' | -56 | NC_005856.1 | + | 15162 | 0.68 | 0.744542 |
Target: 5'- uCUGuUCGUCGGGCAccgauacggUGUCgUCCAGCGCa -3' miRNA: 3'- -GGC-GGCGGUUUGU---------AUAGgGGGUCGCG- -5' |
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27318 | 5' | -56 | NC_005856.1 | + | 15873 | 0.66 | 0.83208 |
Target: 5'- -gGCCGCCGGGCAUAgUgCUgaacaaaucgaacagCAGCGCc -3' miRNA: 3'- ggCGGCGGUUUGUAUaGgGG---------------GUCGCG- -5' |
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27318 | 5' | -56 | NC_005856.1 | + | 17562 | 0.74 | 0.378166 |
Target: 5'- gCCGCCuaagaaGCCGGACAguuguaccgGUgCCCCuGCGCg -3' miRNA: 3'- -GGCGG------CGGUUUGUa--------UAgGGGGuCGCG- -5' |
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27318 | 5' | -56 | NC_005856.1 | + | 18029 | 0.66 | 0.828647 |
Target: 5'- aUCGCCGCUAA----AUCCCgCCAGguugcCGCu -3' miRNA: 3'- -GGCGGCGGUUuguaUAGGG-GGUC-----GCG- -5' |
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27318 | 5' | -56 | NC_005856.1 | + | 26268 | 1.12 | 0.001062 |
Target: 5'- gCCGCCGCCAAACAUAUCCCCCAGCGCc -3' miRNA: 3'- -GGCGGCGGUUUGUAUAGGGGGUCGCG- -5' |
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27318 | 5' | -56 | NC_005856.1 | + | 26416 | 0.78 | 0.235528 |
Target: 5'- gCCGUuuCGCUGAACAUAUCCCCCuGaGCa -3' miRNA: 3'- -GGCG--GCGGUUUGUAUAGGGGGuCgCG- -5' |
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27318 | 5' | -56 | NC_005856.1 | + | 27725 | 0.67 | 0.773858 |
Target: 5'- aCCGUCGCCAGACGcgccguaCCCCAucuGuUGCa -3' miRNA: 3'- -GGCGGCGGUUUGUauag---GGGGU---C-GCG- -5' |
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27318 | 5' | -56 | NC_005856.1 | + | 27991 | 0.67 | 0.75443 |
Target: 5'- aUCGCUucCCGGACAUuaCCCCgGGCGUu -3' miRNA: 3'- -GGCGGc-GGUUUGUAuaGGGGgUCGCG- -5' |
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27318 | 5' | -56 | NC_005856.1 | + | 28918 | 0.66 | 0.819934 |
Target: 5'- cCCGCaggGgCAAugGUAUCgcgCCaCCAGUGCg -3' miRNA: 3'- -GGCGg--CgGUUugUAUAG---GG-GGUCGCG- -5' |
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27318 | 5' | -56 | NC_005856.1 | + | 32699 | 0.67 | 0.792754 |
Target: 5'- cCCGCCGCgaaCGGAUAUGUa--CgGGCGCa -3' miRNA: 3'- -GGCGGCG---GUUUGUAUAgggGgUCGCG- -5' |
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27318 | 5' | -56 | NC_005856.1 | + | 36032 | 0.67 | 0.792754 |
Target: 5'- cCCGCCGCgaaCGGAUAUGUa--CgGGCGCa -3' miRNA: 3'- -GGCGGCG---GUUUGUAUAgggGgUCGCG- -5' |
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27318 | 5' | -56 | NC_005856.1 | + | 36885 | 0.69 | 0.672978 |
Target: 5'- -aGCCGCUAuuucuuucAGCGUAUCCagugugCCAGgCGCa -3' miRNA: 3'- ggCGGCGGU--------UUGUAUAGGg-----GGUC-GCG- -5' |
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27318 | 5' | -56 | NC_005856.1 | + | 38740 | 0.66 | 0.837172 |
Target: 5'- gUGCCGCCG---GUAgUCUCCAGUGUg -3' miRNA: 3'- gGCGGCGGUuugUAUaGGGGGUCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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