miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27318 5' -56 NC_005856.1 + 2217 0.67 0.773858
Target:  5'- aCCGCCguaucGCUAAACAgaaagagcgCCCaCCAGCcaGCa -3'
miRNA:   3'- -GGCGG-----CGGUUUGUaua------GGG-GGUCG--CG- -5'
27318 5' -56 NC_005856.1 + 2935 0.73 0.449449
Target:  5'- aCGCCGCCGcGAUAUGgaaCUCCAGCuGCu -3'
miRNA:   3'- gGCGGCGGU-UUGUAUag-GGGGUCG-CG- -5'
27318 5' -56 NC_005856.1 + 9847 0.67 0.774817
Target:  5'- aCCGuCCGCCAuuucccguccggacgGuACAUGcgcagagcuuuacuUCCCCCuucccuGCGCa -3'
miRNA:   3'- -GGC-GGCGGU---------------U-UGUAU--------------AGGGGGu-----CGCG- -5'
27318 5' -56 NC_005856.1 + 9942 0.71 0.568458
Target:  5'- gUCGUCGauuucaaaaCAAACAgUGUUCCCCAGgGCg -3'
miRNA:   3'- -GGCGGCg--------GUUUGU-AUAGGGGGUCgCG- -5'
27318 5' -56 NC_005856.1 + 13578 0.68 0.743547
Target:  5'- aCGCCGCCAGu--UGUUCUUCaguaaguGGCGCa -3'
miRNA:   3'- gGCGGCGGUUuguAUAGGGGG-------UCGCG- -5'
27318 5' -56 NC_005856.1 + 13694 0.67 0.793684
Target:  5'- aUGCCGCgCAGcGCAUcaagguuuucaaagCCCaCCAGCGCc -3'
miRNA:   3'- gGCGGCG-GUU-UGUAua------------GGG-GGUCGCG- -5'
27318 5' -56 NC_005856.1 + 14318 0.73 0.458873
Target:  5'- uUGCCGCCGGGCGcGUag-CCAGCGCa -3'
miRNA:   3'- gGCGGCGGUUUGUaUAgggGGUCGCG- -5'
27318 5' -56 NC_005856.1 + 15162 0.68 0.744542
Target:  5'- uCUGuUCGUCGGGCAccgauacggUGUCgUCCAGCGCa -3'
miRNA:   3'- -GGC-GGCGGUUUGU---------AUAGgGGGUCGCG- -5'
27318 5' -56 NC_005856.1 + 15873 0.66 0.83208
Target:  5'- -gGCCGCCGGGCAUAgUgCUgaacaaaucgaacagCAGCGCc -3'
miRNA:   3'- ggCGGCGGUUUGUAUaGgGG---------------GUCGCG- -5'
27318 5' -56 NC_005856.1 + 17562 0.74 0.378166
Target:  5'- gCCGCCuaagaaGCCGGACAguuguaccgGUgCCCCuGCGCg -3'
miRNA:   3'- -GGCGG------CGGUUUGUa--------UAgGGGGuCGCG- -5'
27318 5' -56 NC_005856.1 + 18029 0.66 0.828647
Target:  5'- aUCGCCGCUAA----AUCCCgCCAGguugcCGCu -3'
miRNA:   3'- -GGCGGCGGUUuguaUAGGG-GGUC-----GCG- -5'
27318 5' -56 NC_005856.1 + 26268 1.12 0.001062
Target:  5'- gCCGCCGCCAAACAUAUCCCCCAGCGCc -3'
miRNA:   3'- -GGCGGCGGUUUGUAUAGGGGGUCGCG- -5'
27318 5' -56 NC_005856.1 + 26416 0.78 0.235528
Target:  5'- gCCGUuuCGCUGAACAUAUCCCCCuGaGCa -3'
miRNA:   3'- -GGCG--GCGGUUUGUAUAGGGGGuCgCG- -5'
27318 5' -56 NC_005856.1 + 27725 0.67 0.773858
Target:  5'- aCCGUCGCCAGACGcgccguaCCCCAucuGuUGCa -3'
miRNA:   3'- -GGCGGCGGUUUGUauag---GGGGU---C-GCG- -5'
27318 5' -56 NC_005856.1 + 27991 0.67 0.75443
Target:  5'- aUCGCUucCCGGACAUuaCCCCgGGCGUu -3'
miRNA:   3'- -GGCGGc-GGUUUGUAuaGGGGgUCGCG- -5'
27318 5' -56 NC_005856.1 + 28918 0.66 0.819934
Target:  5'- cCCGCaggGgCAAugGUAUCgcgCCaCCAGUGCg -3'
miRNA:   3'- -GGCGg--CgGUUugUAUAG---GG-GGUCGCG- -5'
27318 5' -56 NC_005856.1 + 32699 0.67 0.792754
Target:  5'- cCCGCCGCgaaCGGAUAUGUa--CgGGCGCa -3'
miRNA:   3'- -GGCGGCG---GUUUGUAUAgggGgUCGCG- -5'
27318 5' -56 NC_005856.1 + 36032 0.67 0.792754
Target:  5'- cCCGCCGCgaaCGGAUAUGUa--CgGGCGCa -3'
miRNA:   3'- -GGCGGCG---GUUUGUAUAgggGgUCGCG- -5'
27318 5' -56 NC_005856.1 + 36885 0.69 0.672978
Target:  5'- -aGCCGCUAuuucuuucAGCGUAUCCagugugCCAGgCGCa -3'
miRNA:   3'- ggCGGCGGU--------UUGUAUAGGg-----GGUC-GCG- -5'
27318 5' -56 NC_005856.1 + 38740 0.66 0.837172
Target:  5'- gUGCCGCCG---GUAgUCUCCAGUGUg -3'
miRNA:   3'- gGCGGCGGUuugUAUaGGGGGUCGCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.