miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27319 3' -55.5 NC_005856.1 + 49448 0.66 0.835639
Target:  5'- cGCCCUuUUCucauGGuuG-CGCCAGaACGGCa -3'
miRNA:   3'- -CGGGAcAAG----UCggCuGCGGUC-UGUUG- -5'
27319 3' -55.5 NC_005856.1 + 79975 0.66 0.818093
Target:  5'- cCCCUGaUUCAGCa---GCCAGACu-- -3'
miRNA:   3'- cGGGAC-AAGUCGgcugCGGUCUGuug -5'
27319 3' -55.5 NC_005856.1 + 943 0.66 0.818093
Target:  5'- aCCCUGUUacguaUAGCCGAaauUGCCAGGa--- -3'
miRNA:   3'- cGGGACAA-----GUCGGCU---GCGGUCUguug -5'
27319 3' -55.5 NC_005856.1 + 55382 0.66 0.809042
Target:  5'- cGCCCUGgauacgaCGGgCuACGCCAGucggGCAGCa -3'
miRNA:   3'- -CGGGACaa-----GUCgGcUGCGGUC----UGUUG- -5'
27319 3' -55.5 NC_005856.1 + 55157 0.67 0.797018
Target:  5'- cGUUgaGUgaugCGGCCGACGCCGuuuucgccugggcuGAUAGCg -3'
miRNA:   3'- -CGGgaCAa---GUCGGCUGCGGU--------------CUGUUG- -5'
27319 3' -55.5 NC_005856.1 + 77324 0.67 0.79043
Target:  5'- uGCCCUGgaaaaagCAGCUGAacagguaGCCuucGGCGAUg -3'
miRNA:   3'- -CGGGACaa-----GUCGGCUg------CGGu--CUGUUG- -5'
27319 3' -55.5 NC_005856.1 + 8776 0.67 0.780888
Target:  5'- aCCCUGUUCua-UGGCuCCAGAUGACa -3'
miRNA:   3'- cGGGACAAGucgGCUGcGGUCUGUUG- -5'
27319 3' -55.5 NC_005856.1 + 48920 0.67 0.751439
Target:  5'- aGCaCCUGUuacgUCAGCU-ACGCCAGcacCAGCc -3'
miRNA:   3'- -CG-GGACA----AGUCGGcUGCGGUCu--GUUG- -5'
27319 3' -55.5 NC_005856.1 + 27409 0.68 0.745418
Target:  5'- aCCCUGacuauccccaggaacUUCAGCCGcGCGaCCGGACccGCg -3'
miRNA:   3'- cGGGAC---------------AAGUCGGC-UGC-GGUCUGu-UG- -5'
27319 3' -55.5 NC_005856.1 + 2523 0.68 0.731223
Target:  5'- uCCCUGUUCAuGCCGAUGgUgugguuggAGGCAAg -3'
miRNA:   3'- cGGGACAAGU-CGGCUGCgG--------UCUGUUg -5'
27319 3' -55.5 NC_005856.1 + 8224 0.69 0.662327
Target:  5'- aGCaauUUGUcUCAGCCGAUGCCGGcuaccaaggggcgccACAGCg -3'
miRNA:   3'- -CGg--GACA-AGUCGGCUGCGGUC---------------UGUUG- -5'
27319 3' -55.5 NC_005856.1 + 79569 0.7 0.573281
Target:  5'- uUCCUGUUCAuuacgcggcauGaCCGAUGCCAG-CGACu -3'
miRNA:   3'- cGGGACAAGU-----------C-GGCUGCGGUCuGUUG- -5'
27319 3' -55.5 NC_005856.1 + 36767 0.72 0.47157
Target:  5'- uGCCCUGUgCAGCCGuagGCGCaguagGGACAc- -3'
miRNA:   3'- -CGGGACAaGUCGGC---UGCGg----UCUGUug -5'
27319 3' -55.5 NC_005856.1 + 30575 1.12 0.001012
Target:  5'- cGCCCUGUUCAGCCGACGCCAGACAACg -3'
miRNA:   3'- -CGGGACAAGUCGGCUGCGGUCUGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.