miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2732 3' -57.9 NC_001491.2 + 146906 0.78 0.268954
Target:  5'- cGGUCCaggCCGAGGcCCGGGC-CCGGg -3'
miRNA:   3'- aCCAGGcuaGGCUUC-GGCUCGuGGCC- -5'
2732 3' -57.9 NC_001491.2 + 121393 0.77 0.30149
Target:  5'- cUGGgCCGGggucgCCGGAGCUGGGCuggGCCGGg -3'
miRNA:   3'- -ACCaGGCUa----GGCUUCGGCUCG---UGGCC- -5'
2732 3' -57.9 NC_001491.2 + 144608 0.75 0.375417
Target:  5'- aGGUCCGGggCGAAGUCGcuGCGCUGGc -3'
miRNA:   3'- aCCAGGCUagGCUUCGGCu-CGUGGCC- -5'
2732 3' -57.9 NC_001491.2 + 145419 0.75 0.39078
Target:  5'- cGGgcgCCGAagCUGGAGCCGGagcggguGCGCCGGg -3'
miRNA:   3'- aCCa--GGCUa-GGCUUCGGCU-------CGUGGCC- -5'
2732 3' -57.9 NC_001491.2 + 114480 0.74 0.425296
Target:  5'- cUGGagcCCGAcgCCGAGGCCGAGCcCCuGGu -3'
miRNA:   3'- -ACCa--GGCUa-GGCUUCGGCUCGuGG-CC- -5'
2732 3' -57.9 NC_001491.2 + 147316 0.73 0.488179
Target:  5'- -cGUCCGAggaGGAGCCGGGCAUCGc -3'
miRNA:   3'- acCAGGCUaggCUUCGGCUCGUGGCc -5'
2732 3' -57.9 NC_001491.2 + 121360 0.72 0.516445
Target:  5'- gGGUCg---CCGGAGCUGGGCuggGCCGGg -3'
miRNA:   3'- aCCAGgcuaGGCUUCGGCUCG---UGGCC- -5'
2732 3' -57.9 NC_001491.2 + 147706 0.71 0.564901
Target:  5'- gGGcCUGGggaUCGAAGgUGAGCGCCGGg -3'
miRNA:   3'- aCCaGGCUa--GGCUUCgGCUCGUGGCC- -5'
2732 3' -57.9 NC_001491.2 + 121602 0.7 0.614464
Target:  5'- cGGcauUCCGuauUCCGGauGGuCCGAGCcGCCGGg -3'
miRNA:   3'- aCC---AGGCu--AGGCU--UC-GGCUCG-UGGCC- -5'
2732 3' -57.9 NC_001491.2 + 144916 0.7 0.634424
Target:  5'- cGG--CGAgccCCGGAGCCGGGCuggguGCCGGg -3'
miRNA:   3'- aCCagGCUa--GGCUUCGGCUCG-----UGGCC- -5'
2732 3' -57.9 NC_001491.2 + 77814 0.69 0.694017
Target:  5'- cUGGUaCCGGaauUuuGAAcGCCucuGAGCGCCGGu -3'
miRNA:   3'- -ACCA-GGCU---AggCUU-CGG---CUCGUGGCC- -5'
2732 3' -57.9 NC_001491.2 + 123557 0.69 0.703824
Target:  5'- cGGUCCGAU---GGGCCGAGggcaGCUGGa -3'
miRNA:   3'- aCCAGGCUAggcUUCGGCUCg---UGGCC- -5'
2732 3' -57.9 NC_001491.2 + 61654 0.69 0.703824
Target:  5'- uUGGcucCCGAUCCaGGAGCC-AGCuGCUGGa -3'
miRNA:   3'- -ACCa--GGCUAGG-CUUCGGcUCG-UGGCC- -5'
2732 3' -57.9 NC_001491.2 + 147068 0.69 0.703824
Target:  5'- gGGUCUGAaggcuccccUCCGcGGCCGcGGaGCCGGa -3'
miRNA:   3'- aCCAGGCU---------AGGCuUCGGC-UCgUGGCC- -5'
2732 3' -57.9 NC_001491.2 + 58369 0.68 0.732867
Target:  5'- cGGU-CGAUCC-AGGCC-AGCACCGc -3'
miRNA:   3'- aCCAgGCUAGGcUUCGGcUCGUGGCc -5'
2732 3' -57.9 NC_001491.2 + 115838 0.68 0.770388
Target:  5'- cGGcgcUCCGAgcccCUGGAGCCGgcGGCccagGCCGGa -3'
miRNA:   3'- aCC---AGGCUa---GGCUUCGGC--UCG----UGGCC- -5'
2732 3' -57.9 NC_001491.2 + 147390 0.68 0.770388
Target:  5'- cUGGgccgCCGGcUCCaGggGCUcgGAGCGCCGc -3'
miRNA:   3'- -ACCa---GGCU-AGG-CuuCGG--CUCGUGGCc -5'
2732 3' -57.9 NC_001491.2 + 5681 0.67 0.788479
Target:  5'- gUGG-CUGGgaaaagCCGGAGCCGGaaaacGUGCCGGc -3'
miRNA:   3'- -ACCaGGCUa-----GGCUUCGGCU-----CGUGGCC- -5'
2732 3' -57.9 NC_001491.2 + 89651 0.67 0.814591
Target:  5'- aUGGUCCacaGUCguuucuugcgagCGggGuuGAGCGCuCGGg -3'
miRNA:   3'- -ACCAGGc--UAG------------GCuuCggCUCGUG-GCC- -5'
2732 3' -57.9 NC_001491.2 + 140109 0.67 0.814591
Target:  5'- cGGaCgCGcUCCGGAGC--GGCGCCGGg -3'
miRNA:   3'- aCCaG-GCuAGGCUUCGgcUCGUGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.