Results 1 - 10 of 10 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 2732 | 5' | -46.7 | NC_001491.2 | + | 19943 | 0.66 | 0.999951 |
|
Target: 5'- aACGGGUUgggGGCUCgc-GUCUACUu -3' miRNA: 3'- cUGCUCAAaagCCGAGauuUAGGUGG- -5' |
|||||||
| 2732 | 5' | -46.7 | NC_001491.2 | + | 148446 | 0.66 | 0.999914 |
|
Target: 5'- cGCGGGUgcgcucgcCGGCgcgaguGUCCACCg -3' miRNA: 3'- cUGCUCAaaa-----GCCGagauu-UAGGUGG- -5' |
|||||||
| 2732 | 5' | -46.7 | NC_001491.2 | + | 141287 | 0.67 | 0.999809 |
|
Target: 5'- uACGAGcag-CGGUUCcUGGAgCCGCCg -3' miRNA: 3'- cUGCUCaaaaGCCGAG-AUUUaGGUGG- -5' |
|||||||
| 2732 | 5' | -46.7 | NC_001491.2 | + | 58409 | 0.67 | 0.999755 |
|
Target: 5'- -cUGGGcagcCGGCUCUAcAUCUGCCg -3' miRNA: 3'- cuGCUCaaaaGCCGAGAUuUAGGUGG- -5' |
|||||||
| 2732 | 5' | -46.7 | NC_001491.2 | + | 70313 | 0.68 | 0.999051 |
|
Target: 5'- gGGCGuGGUaaagCGGCUCUGguAGUgCGCCg -3' miRNA: 3'- -CUGC-UCAaaa-GCCGAGAU--UUAgGUGG- -5' |
|||||||
| 2732 | 5' | -46.7 | NC_001491.2 | + | 147571 | 0.69 | 0.998285 |
|
Target: 5'- cGCGGGgaa-CGcGC-CUGAAUCCGCCc -3' miRNA: 3'- cUGCUCaaaaGC-CGaGAUUUAGGUGG- -5' |
|||||||
| 2732 | 5' | -46.7 | NC_001491.2 | + | 3964 | 0.69 | 0.998285 |
|
Target: 5'- cGACGAGga--CGGggagGAGUCCACCa -3' miRNA: 3'- -CUGCUCaaaaGCCgagaUUUAGGUGG- -5' |
|||||||
| 2732 | 5' | -46.7 | NC_001491.2 | + | 28791 | 0.71 | 0.988479 |
|
Target: 5'- cGCGAGUUUUacCGGUUCcu-GUUCGCCu -3' miRNA: 3'- cUGCUCAAAA--GCCGAGauuUAGGUGG- -5' |
|||||||
| 2732 | 5' | -46.7 | NC_001491.2 | + | 92888 | 0.73 | 0.967262 |
|
Target: 5'- uACGAGcuggUCGGUUCUGAaacAUCCGCa -3' miRNA: 3'- cUGCUCaaa-AGCCGAGAUU---UAGGUGg -5' |
|||||||
| 2732 | 5' | -46.7 | NC_001491.2 | + | 114395 | 0.76 | 0.921356 |
|
Target: 5'- -cCGGGU--UCGGCUCUcgcUCCACCu -3' miRNA: 3'- cuGCUCAaaAGCCGAGAuuuAGGUGG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home