miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27320 3' -47 NC_005856.1 + 73514 0.66 0.998593
Target:  5'- cCAAAgccaGGCGAUCuGGCggAAGGCa--- -3'
miRNA:   3'- cGUUUa---UCGCUAG-CCGa-UUCCGauug -5'
27320 3' -47 NC_005856.1 + 67666 0.66 0.998282
Target:  5'- cGCGuuacaaAGCGAUCGGCaauAGuaUGGCa -3'
miRNA:   3'- -CGUuua---UCGCUAGCCGau-UCcgAUUG- -5'
27320 3' -47 NC_005856.1 + 11006 0.66 0.998282
Target:  5'- uGC-GAUAGCugaGUUGGCcauAGGCUGAUg -3'
miRNA:   3'- -CGuUUAUCGc--UAGCCGau-UCCGAUUG- -5'
27320 3' -47 NC_005856.1 + 15014 0.66 0.997483
Target:  5'- gGCAaaGAUAGCGcgaCGGCgaacGGCUAccGCg -3'
miRNA:   3'- -CGU--UUAUCGCua-GCCGauu-CCGAU--UG- -5'
27320 3' -47 NC_005856.1 + 31726 0.67 0.99698
Target:  5'- aCAA--GGCGAgCGGCaaaAAGGCUGAg -3'
miRNA:   3'- cGUUuaUCGCUaGCCGa--UUCCGAUUg -5'
27320 3' -47 NC_005856.1 + 58926 0.67 0.993975
Target:  5'- -uGAAUGGCGAaaguuuaaggcuUCGGCUuuuuaucGAGGCUc-- -3'
miRNA:   3'- cgUUUAUCGCU------------AGCCGA-------UUCCGAuug -5'
27320 3' -47 NC_005856.1 + 40073 0.68 0.993068
Target:  5'- aGCAGuUGGgGGuucgauUCGGCgauGGGCUAAUu -3'
miRNA:   3'- -CGUUuAUCgCU------AGCCGau-UCCGAUUG- -5'
27320 3' -47 NC_005856.1 + 30705 0.68 0.991935
Target:  5'- gGCGAAcaacguugucUGGCG-UCGGCUGaacaGGGCgaaAACa -3'
miRNA:   3'- -CGUUU----------AUCGCuAGCCGAU----UCCGa--UUG- -5'
27320 3' -47 NC_005856.1 + 7867 0.68 0.99066
Target:  5'- uUAAAUGGCGAagaaaCGGuCUAaauAGGCUGAUu -3'
miRNA:   3'- cGUUUAUCGCUa----GCC-GAU---UCCGAUUG- -5'
27320 3' -47 NC_005856.1 + 1743 0.68 0.989232
Target:  5'- ----uUGGCGAacucUUGGgUAAGGUUAACa -3'
miRNA:   3'- cguuuAUCGCU----AGCCgAUUCCGAUUG- -5'
27320 3' -47 NC_005856.1 + 28810 0.68 0.98764
Target:  5'- gGCAGAU-GCGAUCGGC-AAG-CUGu- -3'
miRNA:   3'- -CGUUUAuCGCUAGCCGaUUCcGAUug -5'
27320 3' -47 NC_005856.1 + 48786 0.68 0.98764
Target:  5'- uGCAA--AGCGAUCG-CUucGGCUAu- -3'
miRNA:   3'- -CGUUuaUCGCUAGCcGAuuCCGAUug -5'
27320 3' -47 NC_005856.1 + 67710 0.69 0.985871
Target:  5'- cGCuggauUGGCGAUCGGauuaCUAAGGCc--- -3'
miRNA:   3'- -CGuuu--AUCGCUAGCC----GAUUCCGauug -5'
27320 3' -47 NC_005856.1 + 42631 0.69 0.983915
Target:  5'- cCAAuc--CGAUCGGC-GAGGCUAAUg -3'
miRNA:   3'- cGUUuaucGCUAGCCGaUUCCGAUUG- -5'
27320 3' -47 NC_005856.1 + 16926 0.69 0.983915
Target:  5'- -----cAGCGAUCGGCUuuGGUgugUAAUa -3'
miRNA:   3'- cguuuaUCGCUAGCCGAuuCCG---AUUG- -5'
27320 3' -47 NC_005856.1 + 23063 0.71 0.951765
Target:  5'- uUAAAUGGCGGaaaaUCGuGUUGAGGCcAACg -3'
miRNA:   3'- cGUUUAUCGCU----AGC-CGAUUCCGaUUG- -5'
27320 3' -47 NC_005856.1 + 17466 0.73 0.899275
Target:  5'- gGCAAAccgGGCGAUagUGGCau-GGCUGGCg -3'
miRNA:   3'- -CGUUUa--UCGCUA--GCCGauuCCGAUUG- -5'
27320 3' -47 NC_005856.1 + 30772 1.15 0.005349
Target:  5'- aGCAAAUAGCGAUCGGCUAAGGCUAACg -3'
miRNA:   3'- -CGUUUAUCGCUAGCCGAUUCCGAUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.