miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27320 5' -49.2 NC_005856.1 + 64426 0.66 0.992842
Target:  5'- aGCAUugACagaucagcauaaCCAGCCAA-CAggUCCg -3'
miRNA:   3'- -CGUAugUGg-----------GGUCGGUUaGUaaAGGg -5'
27320 5' -49.2 NC_005856.1 + 84089 0.66 0.98779
Target:  5'- aCGUACuuCCgCAGCCAGgcUCGUguuuuaUCCCu -3'
miRNA:   3'- cGUAUGu-GGgGUCGGUU--AGUAa-----AGGG- -5'
27320 5' -49.2 NC_005856.1 + 92125 0.66 0.989328
Target:  5'- cCAaACACCCUuGCCAGUCAc--CUCa -3'
miRNA:   3'- cGUaUGUGGGGuCGGUUAGUaaaGGG- -5'
27320 5' -49.2 NC_005856.1 + 92185 0.66 0.99058
Target:  5'- gGCGUGuucaCCAGCCAAcgccuccUCAUUUCCg -3'
miRNA:   3'- -CGUAUguggGGUCGGUU-------AGUAAAGGg -5'
27320 5' -49.2 NC_005856.1 + 32660 0.66 0.993052
Target:  5'- uCGUGcCACUCCAGCCAAugaauaacUCAccUUCgCCa -3'
miRNA:   3'- cGUAU-GUGGGGUCGGUU--------AGUa-AAG-GG- -5'
27320 5' -49.2 NC_005856.1 + 19734 0.66 0.993052
Target:  5'- cCGUACGCUCUgucGCCuccaccAUCAUUUCCa -3'
miRNA:   3'- cGUAUGUGGGGu--CGGu-----UAGUAAAGGg -5'
27320 5' -49.2 NC_005856.1 + 36071 0.66 0.993052
Target:  5'- uCGUGcCACUCCAGCCAAugaauaacUCAccUUCgCCa -3'
miRNA:   3'- cGUAU-GUGGGGUCGGUU--------AGUa-AAG-GG- -5'
27320 5' -49.2 NC_005856.1 + 41506 0.66 0.992627
Target:  5'- cGCAU-C-CCCCGGCCAuUCAUgaauuuguugaCCa -3'
miRNA:   3'- -CGUAuGuGGGGUCGGUuAGUAaag--------GG- -5'
27320 5' -49.2 NC_005856.1 + 71823 0.66 0.991949
Target:  5'- gGCAgg-GCUUCAGCCGuccgaucucAUCAUUgUCCCg -3'
miRNA:   3'- -CGUaugUGGGGUCGGU---------UAGUAA-AGGG- -5'
27320 5' -49.2 NC_005856.1 + 28932 0.66 0.989328
Target:  5'- gGUAUcGCGCCaCCagugcgauugAGCCGAUCAaucUCCCc -3'
miRNA:   3'- -CGUA-UGUGG-GG----------UCGGUUAGUaa-AGGG- -5'
27320 5' -49.2 NC_005856.1 + 92831 0.67 0.979872
Target:  5'- uCGUACAUUagaUCAGCCG-UCgAUUUCCCa -3'
miRNA:   3'- cGUAUGUGG---GGUCGGUuAG-UAAAGGG- -5'
27320 5' -49.2 NC_005856.1 + 55375 0.67 0.986788
Target:  5'- aGCgGUACGCCCUGgauacgacgggcuacGCCAGUCGggcagcaggCCCa -3'
miRNA:   3'- -CG-UAUGUGGGGU---------------CGGUUAGUaaa------GGG- -5'
27320 5' -49.2 NC_005856.1 + 48935 0.67 0.982137
Target:  5'- aGC-UACGCCagcaCCAGCCGugaauAUCA--UCCCc -3'
miRNA:   3'- -CGuAUGUGG----GGUCGGU-----UAGUaaAGGG- -5'
27320 5' -49.2 NC_005856.1 + 85475 0.68 0.965257
Target:  5'- aGCGUAUGCCCCGGCUuAAUguUUaaUgCCg -3'
miRNA:   3'- -CGUAUGUGGGGUCGG-UUAguAA--AgGG- -5'
27320 5' -49.2 NC_005856.1 + 27931 0.69 0.957719
Target:  5'- aGC-UGCGCCauuaaCAGCUcuUCGUUUUCCu -3'
miRNA:   3'- -CGuAUGUGGg----GUCGGuuAGUAAAGGG- -5'
27320 5' -49.2 NC_005856.1 + 15801 0.69 0.939462
Target:  5'- ---aACA-UCCGGCCAAUCAUcgCCCc -3'
miRNA:   3'- cguaUGUgGGGUCGGUUAGUAaaGGG- -5'
27320 5' -49.2 NC_005856.1 + 81140 0.71 0.882202
Target:  5'- ---aGCGCCCUGGCUAAU-AUUUCCUg -3'
miRNA:   3'- cguaUGUGGGGUCGGUUAgUAAAGGG- -5'
27320 5' -49.2 NC_005856.1 + 34237 0.74 0.754174
Target:  5'- aCAgACACCuCCAGCCuaccaguaaCAUUUCCCg -3'
miRNA:   3'- cGUaUGUGG-GGUCGGuua------GUAAAGGG- -5'
27320 5' -49.2 NC_005856.1 + 73784 0.74 0.733167
Target:  5'- gGCAUAUAacuCCCCGGCC--UCGUUgaaCCCg -3'
miRNA:   3'- -CGUAUGU---GGGGUCGGuuAGUAAa--GGG- -5'
27320 5' -49.2 NC_005856.1 + 70355 0.79 0.504413
Target:  5'- aUAUGCGCCCCAGaCAGUCGcUUCCa -3'
miRNA:   3'- cGUAUGUGGGGUCgGUUAGUaAAGGg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.