Results 1 - 20 of 21 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
27324 | 3' | -48.4 | NC_005856.1 | + | 43321 | 0.66 | 0.996733 |
Target: 5'- gCCCGGGCAgcagguaaACUUGGAUuaaAGGCAguugguaaagGGGCg -3' miRNA: 3'- -GGGCUUGU--------UGGACUUAc--UCUGU----------UCCG- -5' |
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27324 | 3' | -48.4 | NC_005856.1 | + | 73509 | 0.66 | 0.996131 |
Target: 5'- gCCaGGCGAUCUGGcgGAaGGCAaucgggAGGCg -3' miRNA: 3'- gGGcUUGUUGGACUuaCU-CUGU------UCCG- -5' |
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27324 | 3' | -48.4 | NC_005856.1 | + | 79174 | 0.66 | 0.996066 |
Target: 5'- cCCCGAcgaaagaGCAgaucGCCUGGAUGc-GC-AGGCu -3' miRNA: 3'- -GGGCU-------UGU----UGGACUUACucUGuUCCG- -5' |
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27324 | 3' | -48.4 | NC_005856.1 | + | 28226 | 0.66 | 0.995728 |
Target: 5'- cCCCGGcACAGCCUGAugaaacgguuagcgaAgcAGAUgcaGAGGCu -3' miRNA: 3'- -GGGCU-UGUUGGACU---------------UacUCUG---UUCCG- -5' |
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27324 | 3' | -48.4 | NC_005856.1 | + | 76984 | 0.67 | 0.99413 |
Target: 5'- -gCGAACAACCucauaaaguuuuucaUGAGUcagggaauGGACAAGGCc -3' miRNA: 3'- ggGCUUGUUGG---------------ACUUAc-------UCUGUUCCG- -5' |
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27324 | 3' | -48.4 | NC_005856.1 | + | 72679 | 0.67 | 0.992749 |
Target: 5'- gUCuuAUAACCUGGccugcgccuuuaGUGAGGCAGGGg -3' miRNA: 3'- gGGcuUGUUGGACU------------UACUCUGUUCCg -5' |
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27324 | 3' | -48.4 | NC_005856.1 | + | 91556 | 0.67 | 0.992749 |
Target: 5'- gCuuGAACAggAUCUGGAcGAaGACGAGGa -3' miRNA: 3'- -GggCUUGU--UGGACUUaCU-CUGUUCCg -5' |
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27324 | 3' | -48.4 | NC_005856.1 | + | 88929 | 0.68 | 0.981566 |
Target: 5'- aCCGAGCaAACCaUGGcaacaaAUGAGGCAuuGCa -3' miRNA: 3'- gGGCUUG-UUGG-ACU------UACUCUGUucCG- -5' |
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27324 | 3' | -48.4 | NC_005856.1 | + | 77065 | 0.68 | 0.981566 |
Target: 5'- gCCGAACuaaaAGCCUcgcGggUGAGAgAagcccAGGCu -3' miRNA: 3'- gGGCUUG----UUGGA---CuuACUCUgU-----UCCG- -5' |
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27324 | 3' | -48.4 | NC_005856.1 | + | 48200 | 0.68 | 0.981344 |
Target: 5'- aCCGGuuuugACAGCCUGAAUGuuagugcGGACAAccGCa -3' miRNA: 3'- gGGCU-----UGUUGGACUUAC-------UCUGUUc-CG- -5' |
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27324 | 3' | -48.4 | NC_005856.1 | + | 71308 | 0.69 | 0.976739 |
Target: 5'- aCCCaGGCGugCUGAAUGucAGAUAuaaucGGCa -3' miRNA: 3'- -GGGcUUGUugGACUUAC--UCUGUu----CCG- -5' |
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27324 | 3' | -48.4 | NC_005856.1 | + | 74105 | 0.69 | 0.975125 |
Target: 5'- aUCCGGugGcgcucccaaugugccGCCUGAAgcgucaGGACAAGGUg -3' miRNA: 3'- -GGGCUugU---------------UGGACUUac----UCUGUUCCG- -5' |
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27324 | 3' | -48.4 | NC_005856.1 | + | 10629 | 0.7 | 0.960724 |
Target: 5'- uCCCGggUAACUggUGGAUuaucGAGACAAaacacaacguGGCg -3' miRNA: 3'- -GGGCuuGUUGG--ACUUA----CUCUGUU----------CCG- -5' |
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27324 | 3' | -48.4 | NC_005856.1 | + | 71129 | 0.7 | 0.956782 |
Target: 5'- aCCUGGuucguuGCCUGAGcuaGGGGCAAGGUu -3' miRNA: 3'- -GGGCUugu---UGGACUUa--CUCUGUUCCG- -5' |
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27324 | 3' | -48.4 | NC_005856.1 | + | 22839 | 0.7 | 0.956782 |
Target: 5'- -gCGGcAUAACCUGAAucUGAGGCAGcaccuGGCa -3' miRNA: 3'- ggGCU-UGUUGGACUU--ACUCUGUU-----CCG- -5' |
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27324 | 3' | -48.4 | NC_005856.1 | + | 39771 | 0.7 | 0.948106 |
Target: 5'- uCCCgGGACuguCCUGGguaaaggcAUGGGGCGAGGg -3' miRNA: 3'- -GGG-CUUGuu-GGACU--------UACUCUGUUCCg -5' |
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27324 | 3' | -48.4 | NC_005856.1 | + | 55258 | 0.71 | 0.92749 |
Target: 5'- uCCUGAGCAAauCCUGGAaGGGAaagAAGGUa -3' miRNA: 3'- -GGGCUUGUU--GGACUUaCUCUg--UUCCG- -5' |
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27324 | 3' | -48.4 | NC_005856.1 | + | 66694 | 0.73 | 0.873077 |
Target: 5'- gCCC--GCGAUaCUGAAUGccuGACAAGGCg -3' miRNA: 3'- -GGGcuUGUUG-GACUUACu--CUGUUCCG- -5' |
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27324 | 3' | -48.4 | NC_005856.1 | + | 39705 | 0.74 | 0.83971 |
Target: 5'- cCCCGccccauACGACCUGAucaucauAGGCAAGGUa -3' miRNA: 3'- -GGGCu-----UGUUGGACUuac----UCUGUUCCG- -5' |
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27324 | 3' | -48.4 | NC_005856.1 | + | 37985 | 0.76 | 0.731853 |
Target: 5'- uUCGGACAguaauuaucccGCCUGAGuagguUGGGACGAGGUu -3' miRNA: 3'- gGGCUUGU-----------UGGACUU-----ACUCUGUUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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