Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27329 | 3' | -53.2 | NC_005856.1 | + | 61555 | 1.09 | 0.00302 |
Target: 5'- cACUGGAGGGAAAAGCGGAUGGACAGAu -3' miRNA: 3'- -UGACCUCCCUUUUCGCCUACCUGUCU- -5' |
|||||||
27329 | 3' | -53.2 | NC_005856.1 | + | 61524 | 0.66 | 0.903714 |
Target: 5'- uGCUGGAGGGAAAGGCaGAg------- -3' miRNA: 3'- -UGACCUCCCUUUUCGcCUaccugucu -5' |
|||||||
27329 | 3' | -53.2 | NC_005856.1 | + | 61432 | 0.66 | 0.916452 |
Target: 5'- uGCUGGAGGGAGAauaaaAGUcuaaGAUGugcGAUAGAg -3' miRNA: 3'- -UGACCUCCCUUU-----UCGc---CUAC---CUGUCU- -5' |
|||||||
27329 | 3' | -53.2 | NC_005856.1 | + | 70193 | 0.66 | 0.918271 |
Target: 5'- aGCUGGuuauccaccguggacGGGGAAAuaaGGAgaaauaaUGGACAGAu -3' miRNA: 3'- -UGACC---------------UCCCUUUucgCCU-------ACCUGUCU- -5' |
|||||||
27329 | 3' | -53.2 | NC_005856.1 | + | 62817 | 0.72 | 0.630958 |
Target: 5'- uGCUGGAGGGAAAAcgauGUGuGcUGGAgGGAu -3' miRNA: 3'- -UGACCUCCCUUUU----CGC-CuACCUgUCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home