miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27329 3' -53.2 NC_005856.1 + 61555 1.09 0.00302
Target:  5'- cACUGGAGGGAAAAGCGGAUGGACAGAu -3'
miRNA:   3'- -UGACCUCCCUUUUCGCCUACCUGUCU- -5'
27329 3' -53.2 NC_005856.1 + 61524 0.66 0.903714
Target:  5'- uGCUGGAGGGAAAGGCaGAg------- -3'
miRNA:   3'- -UGACCUCCCUUUUCGcCUaccugucu -5'
27329 3' -53.2 NC_005856.1 + 61432 0.66 0.916452
Target:  5'- uGCUGGAGGGAGAauaaaAGUcuaaGAUGugcGAUAGAg -3'
miRNA:   3'- -UGACCUCCCUUU-----UCGc---CUAC---CUGUCU- -5'
27329 3' -53.2 NC_005856.1 + 70193 0.66 0.918271
Target:  5'- aGCUGGuuauccaccguggacGGGGAAAuaaGGAgaaauaaUGGACAGAu -3'
miRNA:   3'- -UGACC---------------UCCCUUUucgCCU-------ACCUGUCU- -5'
27329 3' -53.2 NC_005856.1 + 62817 0.72 0.630958
Target:  5'- uGCUGGAGGGAAAAcgauGUGuGcUGGAgGGAu -3'
miRNA:   3'- -UGACCUCCCUUUU----CGC-CuACCUgUCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.