miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2733 5' -55 NC_001491.2 + 48479 0.65 0.952801
Target:  5'- uGACGCCuaaACUgcugCACCGAGUGCgagaCAUGUc -3'
miRNA:   3'- cCUGUGG---UGGa---GUGGCUCAUG----GUGCA- -5'
2733 5' -55 NC_001491.2 + 1803 0.66 0.948687
Target:  5'- cGGuCAUCACgCUCGCCGu---CCACGc -3'
miRNA:   3'- -CCuGUGGUG-GAGUGGCucauGGUGCa -5'
2733 5' -55 NC_001491.2 + 139992 0.66 0.944342
Target:  5'- cGGAC-CCGCUgCGCCGcgccguggggcGGUACCuCGUg -3'
miRNA:   3'- -CCUGuGGUGGaGUGGC-----------UCAUGGuGCA- -5'
2733 5' -55 NC_001491.2 + 144829 0.66 0.934949
Target:  5'- aGGGCgACCGCUUCGCCuucccuCCGCGg -3'
miRNA:   3'- -CCUG-UGGUGGAGUGGcucau-GGUGCa -5'
2733 5' -55 NC_001491.2 + 145685 0.66 0.934949
Target:  5'- cGGgGCCuCCUCgGCCG-GUGCCugGg -3'
miRNA:   3'- cCUgUGGuGGAG-UGGCuCAUGGugCa -5'
2733 5' -55 NC_001491.2 + 47596 0.67 0.91908
Target:  5'- -aACGCCGCC-CugUGAGgaucgcgGCCGCGa -3'
miRNA:   3'- ccUGUGGUGGaGugGCUCa------UGGUGCa -5'
2733 5' -55 NC_001491.2 + 136951 0.68 0.894614
Target:  5'- aGcCACCGCCUCugCGGcUGCCAUu- -3'
miRNA:   3'- cCuGUGGUGGAGugGCUcAUGGUGca -5'
2733 5' -55 NC_001491.2 + 125196 0.68 0.894614
Target:  5'- cGcCACCGCCggCACCGAGgucuuCCGCu- -3'
miRNA:   3'- cCuGUGGUGGa-GUGGCUCau---GGUGca -5'
2733 5' -55 NC_001491.2 + 39694 0.68 0.881001
Target:  5'- uGACACCACCUgCuuCG-GUGCCuCGUg -3'
miRNA:   3'- cCUGUGGUGGA-GugGCuCAUGGuGCA- -5'
2733 5' -55 NC_001491.2 + 141479 0.68 0.873862
Target:  5'- gGGAUAuCCACCUCcUCGAu--CCACGUg -3'
miRNA:   3'- -CCUGU-GGUGGAGuGGCUcauGGUGCA- -5'
2733 5' -55 NC_001491.2 + 45249 0.68 0.873136
Target:  5'- cGGGgGCCGCCgcagauuUgGCCGGG-GCCGCGg -3'
miRNA:   3'- -CCUgUGGUGG-------AgUGGCUCaUGGUGCa -5'
2733 5' -55 NC_001491.2 + 45216 0.68 0.873136
Target:  5'- cGGGgGCCGCCgcagauuUgGCCGGG-GCCGCGg -3'
miRNA:   3'- -CCUgUGGUGG-------AgUGGCUCaUGGUGCa -5'
2733 5' -55 NC_001491.2 + 45183 0.68 0.873136
Target:  5'- cGGGgGCCGCCgcagauuUgGCCGGG-GCCGCGg -3'
miRNA:   3'- -CCUgUGGUGG-------AgUGGCUCaUGGUGCa -5'
2733 5' -55 NC_001491.2 + 45150 0.68 0.873136
Target:  5'- cGGGgGCCGCCgcagauuUgGCCGGG-GCCGCGg -3'
miRNA:   3'- -CCUgUGGUGG-------AgUGGCUCaUGGUGCa -5'
2733 5' -55 NC_001491.2 + 45117 0.68 0.873136
Target:  5'- cGGGgGCCGCCgcagauuUgGCCGGG-GCCGCGg -3'
miRNA:   3'- -CCUgUGGUGG-------AgUGGCUCaUGGUGCa -5'
2733 5' -55 NC_001491.2 + 32271 0.69 0.851176
Target:  5'- aGGACaagcucGCCAgCCUCACCGcuGUugCugGg -3'
miRNA:   3'- -CCUG------UGGU-GGAGUGGCu-CAugGugCa -5'
2733 5' -55 NC_001491.2 + 125499 0.69 0.835054
Target:  5'- cGACGCCGCCccgCcCCGGGgacCCGCGg -3'
miRNA:   3'- cCUGUGGUGGa--GuGGCUCau-GGUGCa -5'
2733 5' -55 NC_001491.2 + 138139 0.7 0.797986
Target:  5'- cGGCGCCuCCUCGCCgcugGAGUuggcggcccccccgGCCGCGg -3'
miRNA:   3'- cCUGUGGuGGAGUGG----CUCA--------------UGGUGCa -5'
2733 5' -55 NC_001491.2 + 145287 0.7 0.773261
Target:  5'- gGGuuuuCGCgGCgUUCugCGAGUGCCGCGg -3'
miRNA:   3'- -CCu---GUGgUG-GAGugGCUCAUGGUGCa -5'
2733 5' -55 NC_001491.2 + 132605 0.7 0.76007
Target:  5'- cGGGCucuaugaccucauCCACCUCAUCGAGU-CUugGg -3'
miRNA:   3'- -CCUGu------------GGUGGAGUGGCUCAuGGugCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.