Results 1 - 9 of 9 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27330 | 5' | -52.6 | NC_005856.1 | + | 82441 | 1.15 | 0.001524 |
Target: 5'- gGCCAUUAUCCAGAACAUCCGGGCCGCg -3' miRNA: 3'- -CGGUAAUAGGUCUUGUAGGCCCGGCG- -5' |
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27330 | 5' | -52.6 | NC_005856.1 | + | 695 | 0.72 | 0.678805 |
Target: 5'- ----cUAUCCAGcAACAUuuGGGCCaGCu -3' miRNA: 3'- cgguaAUAGGUC-UUGUAggCCCGG-CG- -5' |
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27330 | 5' | -52.6 | NC_005856.1 | + | 39652 | 0.71 | 0.721051 |
Target: 5'- uGCCuUUAcCCAGGACAgucCCGGGauguuaCGCa -3' miRNA: 3'- -CGGuAAUaGGUCUUGUa--GGCCCg-----GCG- -5' |
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27330 | 5' | -52.6 | NC_005856.1 | + | 16861 | 0.71 | 0.751886 |
Target: 5'- cGCCGaUGguUCCAGAguguuaccuACGUCCGcGCCGUa -3' miRNA: 3'- -CGGUaAU--AGGUCU---------UGUAGGCcCGGCG- -5' |
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27330 | 5' | -52.6 | NC_005856.1 | + | 88277 | 0.69 | 0.828213 |
Target: 5'- gGCCAUUAUCgGGAGaGUUCaGGCCa- -3' miRNA: 3'- -CGGUAAUAGgUCUUgUAGGcCCGGcg -5' |
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27330 | 5' | -52.6 | NC_005856.1 | + | 8068 | 0.67 | 0.923985 |
Target: 5'- -aCAUgaaagCCA--GCAUCCGGGCCa- -3' miRNA: 3'- cgGUAaua--GGUcuUGUAGGCCCGGcg -5' |
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27330 | 5' | -52.6 | NC_005856.1 | + | 57021 | 0.67 | 0.898956 |
Target: 5'- aGUCAUUAggUAauGCAUCCGGcGUCGCg -3' miRNA: 3'- -CGGUAAUagGUcuUGUAGGCC-CGGCG- -5' |
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27330 | 5' | -52.6 | NC_005856.1 | + | 85232 | 0.68 | 0.861961 |
Target: 5'- aCCGaacUAUCCGGAAUGUCCGGauaGuuGCc -3' miRNA: 3'- cGGUa--AUAGGUCUUGUAGGCC---CggCG- -5' |
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27330 | 5' | -52.6 | NC_005856.1 | + | 82529 | 0.69 | 0.828213 |
Target: 5'- aCCGgcAUUCAGGACAUCCGGGauaGa -3' miRNA: 3'- cGGUaaUAGGUCUUGUAGGCCCgg-Cg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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