miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27331 3' -46.7 NC_005856.1 + 94118 0.66 0.998931
Target:  5'- uGAGUUGu--UGGCCAuguCAAUUCugGa -3'
miRNA:   3'- uCUUAACuguACCGGUu--GUUGAGugU- -5'
27331 3' -46.7 NC_005856.1 + 62747 0.66 0.998683
Target:  5'- cAGAcgUGGCGcGGCCuGCAACgaUCAgGg -3'
miRNA:   3'- -UCUuaACUGUaCCGGuUGUUG--AGUgU- -5'
27331 3' -46.7 NC_005856.1 + 76952 0.66 0.998387
Target:  5'- gGGAAUgGACAaGGCCGcuGCcACUgCGCAg -3'
miRNA:   3'- -UCUUAaCUGUaCCGGU--UGuUGA-GUGU- -5'
27331 3' -46.7 NC_005856.1 + 94232 0.66 0.998354
Target:  5'- cGAAUaucuCAUGGCCAcuaaccaGCcaGACUCACAa -3'
miRNA:   3'- uCUUAacu-GUACCGGU-------UG--UUGAGUGU- -5'
27331 3' -46.7 NC_005856.1 + 72516 0.67 0.997143
Target:  5'- -aGAUUGGCuuuuaacGGCCAAU-ACUCACGg -3'
miRNA:   3'- ucUUAACUGua-----CCGGUUGuUGAGUGU- -5'
27331 3' -46.7 NC_005856.1 + 23250 0.67 0.995936
Target:  5'- cAGAaaaucAUUGAUAUGGCCAugAAUg-GCGu -3'
miRNA:   3'- -UCU-----UAACUGUACCGGUugUUGagUGU- -5'
27331 3' -46.7 NC_005856.1 + 94149 0.68 0.992272
Target:  5'- --------gGUGGCCAACAACUCcCAg -3'
miRNA:   3'- ucuuaacugUACCGGUUGUUGAGuGU- -5'
27331 3' -46.7 NC_005856.1 + 17477 0.68 0.991034
Target:  5'- cGAuagUGGCAUGGCUGGCGAUgggCugGu -3'
miRNA:   3'- uCUua-ACUGUACCGGUUGUUGa--GugU- -5'
27331 3' -46.7 NC_005856.1 + 93086 0.69 0.986366
Target:  5'- uGAAgcucUGGCAUGGCUuaaugAAUAACUCAUu -3'
miRNA:   3'- uCUUa---ACUGUACCGG-----UUGUUGAGUGu -5'
27331 3' -46.7 NC_005856.1 + 39843 0.69 0.982345
Target:  5'- cAGAAUcGACAggcgucagguuuUGGCCAGCAAC-CAgGg -3'
miRNA:   3'- -UCUUAaCUGU------------ACCGGUUGUUGaGUgU- -5'
27331 3' -46.7 NC_005856.1 + 41053 0.7 0.968462
Target:  5'- gAGAGUUGAUugAUGGCCAAUAAUa-ACGa -3'
miRNA:   3'- -UCUUAACUG--UACCGGUUGUUGagUGU- -5'
27331 3' -46.7 NC_005856.1 + 79554 0.71 0.952786
Target:  5'- -----cGGCAUGaccgauGCCAGCGACUCAUAa -3'
miRNA:   3'- ucuuaaCUGUAC------CGGUUGUUGAGUGU- -5'
27331 3' -46.7 NC_005856.1 + 94000 1.1 0.010379
Target:  5'- cAGAAUUGACAUGGCCAACAACUCACAg -3'
miRNA:   3'- -UCUUAACUGUACCGGUUGUUGAGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.