miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27332 5' -52.2 NC_005857.1 + 32623 0.66 0.846613
Target:  5'- -gGGCAGCUuucGGGCUggCCGGUAGcugauuggGCCg -3'
miRNA:   3'- uaUUGUUGG---UCCGA--GGCCGUCua------UGG- -5'
27332 5' -52.2 NC_005857.1 + 14060 0.66 0.846613
Target:  5'- --cGCAGCCGGGUgauaugguuaUCauGCAGGUGCa -3'
miRNA:   3'- uauUGUUGGUCCG----------AGgcCGUCUAUGg -5'
27332 5' -52.2 NC_005857.1 + 23170 0.66 0.828276
Target:  5'- -gGACgAACCAGauccccgaCUCCGGCGGccugGCCa -3'
miRNA:   3'- uaUUG-UUGGUCc-------GAGGCCGUCua--UGG- -5'
27332 5' -52.2 NC_005857.1 + 36481 0.66 0.81877
Target:  5'- cUGAUAGCCAGGgUCCuGGUA-AUGCa -3'
miRNA:   3'- uAUUGUUGGUCCgAGG-CCGUcUAUGg -5'
27332 5' -52.2 NC_005857.1 + 25281 0.66 0.81877
Target:  5'- -gAGCAACgGGGguguugauaUUCCGGCAGc-GCCa -3'
miRNA:   3'- uaUUGUUGgUCC---------GAGGCCGUCuaUGG- -5'
27332 5' -52.2 NC_005857.1 + 9757 0.67 0.79612
Target:  5'- -gAACAACugaaugccgccauuCAGGUUCUGGCAGAa--- -3'
miRNA:   3'- uaUUGUUG--------------GUCCGAGGCCGUCUaugg -5'
27332 5' -52.2 NC_005857.1 + 16748 0.67 0.7577
Target:  5'- --cGCAGCCGGGCUacaucauuggaCUGGCuGAUgaacuucugGCCg -3'
miRNA:   3'- uauUGUUGGUCCGA-----------GGCCGuCUA---------UGG- -5'
27332 5' -52.2 NC_005857.1 + 2313 0.67 0.7577
Target:  5'- --uGCAGCgGGGUUuauuaCCGGCGGAguacucUGCCu -3'
miRNA:   3'- uauUGUUGgUCCGA-----GGCCGUCU------AUGG- -5'
27332 5' -52.2 NC_005857.1 + 21415 0.68 0.724026
Target:  5'- cGUGACGuuaCAGGCUCCguacaacGGCAcccGUGCCg -3'
miRNA:   3'- -UAUUGUug-GUCCGAGG-------CCGUc--UAUGG- -5'
27332 5' -52.2 NC_005857.1 + 9273 0.68 0.691659
Target:  5'- -cAGCAGgCuGGCggggCUGGCAGGaGCCg -3'
miRNA:   3'- uaUUGUUgGuCCGa---GGCCGUCUaUGG- -5'
27332 5' -52.2 NC_005857.1 + 38128 0.69 0.669015
Target:  5'- uAUAACGGCCaugcaccugAGGCUCUGGagaAGA-GCCu -3'
miRNA:   3'- -UAUUGUUGG---------UCCGAGGCCg--UCUaUGG- -5'
27332 5' -52.2 NC_005857.1 + 22569 0.7 0.611956
Target:  5'- ----aAACCAGGCguuauucaCCGGCGGAaacACCa -3'
miRNA:   3'- uauugUUGGUCCGa-------GGCCGUCUa--UGG- -5'
27332 5' -52.2 NC_005857.1 + 10518 0.7 0.611956
Target:  5'- cUGGcCAGCCAGGCUaagcagaaaCUGGCAGcgGCg -3'
miRNA:   3'- uAUU-GUUGGUCCGA---------GGCCGUCuaUGg -5'
27332 5' -52.2 NC_005857.1 + 5089 0.7 0.589188
Target:  5'- -cAACuGCCGcuGGUUCCGGCgGGGUACUu -3'
miRNA:   3'- uaUUGuUGGU--CCGAGGCCG-UCUAUGG- -5'
27332 5' -52.2 NC_005857.1 + 14136 0.7 0.577857
Target:  5'- cAUGAUAACCAuaucacccGGCUgCGGCGG--GCCa -3'
miRNA:   3'- -UAUUGUUGGU--------CCGAgGCCGUCuaUGG- -5'
27332 5' -52.2 NC_005857.1 + 44986 0.72 0.468551
Target:  5'- -aGACcuGACCGGGCggCUGGCAGGgcgGCUg -3'
miRNA:   3'- uaUUG--UUGGUCCGa-GGCCGUCUa--UGG- -5'
27332 5' -52.2 NC_005857.1 + 18399 0.73 0.427814
Target:  5'- uUGACAGCCAGGCuaUCUGGUAcuuuGAUaacgGCCg -3'
miRNA:   3'- uAUUGUUGGUCCG--AGGCCGU----CUA----UGG- -5'
27332 5' -52.2 NC_005857.1 + 8220 0.74 0.370837
Target:  5'- -cGACuuuuCCGGGCcaUCCGGCAGAUcACUg -3'
miRNA:   3'- uaUUGuu--GGUCCG--AGGCCGUCUA-UGG- -5'
27332 5' -52.2 NC_005857.1 + 22758 0.76 0.31121
Target:  5'- --uGCGGCCAGcGCUCaggaugCGGCAGAUGCg -3'
miRNA:   3'- uauUGUUGGUC-CGAG------GCCGUCUAUGg -5'
27332 5' -52.2 NC_005857.1 + 2360 1.11 0.001154
Target:  5'- aAUAACAACCAGGCUCCGGCAGAUACCa -3'
miRNA:   3'- -UAUUGUUGGUCCGAGGCCGUCUAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.