Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
27336 | 3' | -46.4 | NC_005857.1 | + | 2965 | 0.66 | 0.99292 |
Target: 5'- ---cCGACguacucgGGCUgaaUCUGGCGGUGGa -3' miRNA: 3'- cuaaGUUGa------UUGAaa-AGGCCGUCGCC- -5' |
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27336 | 3' | -46.4 | NC_005857.1 | + | 16764 | 0.66 | 0.991595 |
Target: 5'- cAUUgGACUGGCUgaugaacUUCUGGCcggacgcgugaacGGCGGg -3' miRNA: 3'- cUAAgUUGAUUGAa------AAGGCCG-------------UCGCC- -5' |
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27336 | 3' | -46.4 | NC_005857.1 | + | 48453 | 0.66 | 0.990372 |
Target: 5'- ---cCAGCUGGCaaacguccUCCGGCgcuacGGCGGa -3' miRNA: 3'- cuaaGUUGAUUGaaa-----AGGCCG-----UCGCC- -5' |
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27336 | 3' | -46.4 | NC_005857.1 | + | 17272 | 0.67 | 0.988692 |
Target: 5'- uGAUUCAccacagaauacgaGCUGAUaacgaugcUUUCCGGCGGCu- -3' miRNA: 3'- -CUAAGU-------------UGAUUGa-------AAAGGCCGUCGcc -5' |
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27336 | 3' | -46.4 | NC_005857.1 | + | 5726 | 0.67 | 0.988692 |
Target: 5'- aAUUCAGCguaccAGCgcgaUUCCGGCgaaccucggagagGGCGGg -3' miRNA: 3'- cUAAGUUGa----UUGaa--AAGGCCG-------------UCGCC- -5' |
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27336 | 3' | -46.4 | NC_005857.1 | + | 220 | 0.67 | 0.985263 |
Target: 5'- ---cCAAgUAAUUcgUCCGGCGGUGa -3' miRNA: 3'- cuaaGUUgAUUGAaaAGGCCGUCGCc -5' |
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27336 | 3' | -46.4 | NC_005857.1 | + | 21781 | 0.67 | 0.983166 |
Target: 5'- uGAUgccgCAGCUAACgccaUCGGCAGCc- -3' miRNA: 3'- -CUAa---GUUGAUUGaaaaGGCCGUCGcc -5' |
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27336 | 3' | -46.4 | NC_005857.1 | + | 25283 | 0.67 | 0.980852 |
Target: 5'- ---gCAACggggGugUUgauaUUCCGGCAGCGc -3' miRNA: 3'- cuaaGUUGa---UugAA----AAGGCCGUCGCc -5' |
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27336 | 3' | -46.4 | NC_005857.1 | + | 4050 | 0.7 | 0.926294 |
Target: 5'- cGUUCuggauAUUAAU---UCCGGCGGCGGc -3' miRNA: 3'- cUAAGu----UGAUUGaaaAGGCCGUCGCC- -5' |
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27336 | 3' | -46.4 | NC_005857.1 | + | 15508 | 0.71 | 0.91334 |
Target: 5'- --gUCAGagAACUUUUCCGGCGuggcGUGGg -3' miRNA: 3'- cuaAGUUgaUUGAAAAGGCCGU----CGCC- -5' |
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27336 | 3' | -46.4 | NC_005857.1 | + | 5086 | 0.75 | 0.735599 |
Target: 5'- -uUUCAACUGccGCUggUUCCGGCGG-GGu -3' miRNA: 3'- cuAAGUUGAU--UGAa-AAGGCCGUCgCC- -5' |
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27336 | 3' | -46.4 | NC_005857.1 | + | 6966 | 1.12 | 0.005022 |
Target: 5'- cGAUUCAACUAACUUUUCCGGCAGCGGu -3' miRNA: 3'- -CUAAGUUGAUUGAAAAGGCCGUCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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