miRNA display CGI


Results 1 - 12 of 12 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27336 3' -46.4 NC_005857.1 + 2965 0.66 0.99292
Target:  5'- ---cCGACguacucgGGCUgaaUCUGGCGGUGGa -3'
miRNA:   3'- cuaaGUUGa------UUGAaa-AGGCCGUCGCC- -5'
27336 3' -46.4 NC_005857.1 + 16764 0.66 0.991595
Target:  5'- cAUUgGACUGGCUgaugaacUUCUGGCcggacgcgugaacGGCGGg -3'
miRNA:   3'- cUAAgUUGAUUGAa------AAGGCCG-------------UCGCC- -5'
27336 3' -46.4 NC_005857.1 + 48453 0.66 0.990372
Target:  5'- ---cCAGCUGGCaaacguccUCCGGCgcuacGGCGGa -3'
miRNA:   3'- cuaaGUUGAUUGaaa-----AGGCCG-----UCGCC- -5'
27336 3' -46.4 NC_005857.1 + 5726 0.67 0.988692
Target:  5'- aAUUCAGCguaccAGCgcgaUUCCGGCgaaccucggagagGGCGGg -3'
miRNA:   3'- cUAAGUUGa----UUGaa--AAGGCCG-------------UCGCC- -5'
27336 3' -46.4 NC_005857.1 + 17272 0.67 0.988692
Target:  5'- uGAUUCAccacagaauacgaGCUGAUaacgaugcUUUCCGGCGGCu- -3'
miRNA:   3'- -CUAAGU-------------UGAUUGa-------AAAGGCCGUCGcc -5'
27336 3' -46.4 NC_005857.1 + 220 0.67 0.985263
Target:  5'- ---cCAAgUAAUUcgUCCGGCGGUGa -3'
miRNA:   3'- cuaaGUUgAUUGAaaAGGCCGUCGCc -5'
27336 3' -46.4 NC_005857.1 + 21781 0.67 0.983166
Target:  5'- uGAUgccgCAGCUAACgccaUCGGCAGCc- -3'
miRNA:   3'- -CUAa---GUUGAUUGaaaaGGCCGUCGcc -5'
27336 3' -46.4 NC_005857.1 + 25283 0.67 0.980852
Target:  5'- ---gCAACggggGugUUgauaUUCCGGCAGCGc -3'
miRNA:   3'- cuaaGUUGa---UugAA----AAGGCCGUCGCc -5'
27336 3' -46.4 NC_005857.1 + 4050 0.7 0.926294
Target:  5'- cGUUCuggauAUUAAU---UCCGGCGGCGGc -3'
miRNA:   3'- cUAAGu----UGAUUGaaaAGGCCGUCGCC- -5'
27336 3' -46.4 NC_005857.1 + 15508 0.71 0.91334
Target:  5'- --gUCAGagAACUUUUCCGGCGuggcGUGGg -3'
miRNA:   3'- cuaAGUUgaUUGAAAAGGCCGU----CGCC- -5'
27336 3' -46.4 NC_005857.1 + 5086 0.75 0.735599
Target:  5'- -uUUCAACUGccGCUggUUCCGGCGG-GGu -3'
miRNA:   3'- cuAAGUUGAU--UGAa-AAGGCCGUCgCC- -5'
27336 3' -46.4 NC_005857.1 + 6966 1.12 0.005022
Target:  5'- cGAUUCAACUAACUUUUCCGGCAGCGGu -3'
miRNA:   3'- -CUAAGUUGAUUGAAAAGGCCGUCGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.