miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27338 3' -50.3 NC_005857.1 + 15441 0.66 0.926357
Target:  5'- uCAUCCGGCugcuccgucGGcgugCGCUGGcUUGAgCUGCc -3'
miRNA:   3'- -GUAGGCCG---------UCua--GUGACU-AACU-GACG- -5'
27338 3' -50.3 NC_005857.1 + 8086 0.66 0.926357
Target:  5'- --aCCGGUGGGUUc---GUUGACUGCa -3'
miRNA:   3'- guaGGCCGUCUAGugacUAACUGACG- -5'
27338 3' -50.3 NC_005857.1 + 21064 0.66 0.925755
Target:  5'- gGUCCGGCucccGAUgcUACUGAUgguguuguccugcUGGCUGa -3'
miRNA:   3'- gUAGGCCGu---CUA--GUGACUA-------------ACUGACg -5'
27338 3' -50.3 NC_005857.1 + 16847 0.66 0.9202
Target:  5'- gCGUCCGGcCAGAaguUCAUcagccaguccaaUGAUguagcccGGCUGCg -3'
miRNA:   3'- -GUAGGCC-GUCU---AGUG------------ACUAa------CUGACG- -5'
27338 3' -50.3 NC_005857.1 + 4065 0.66 0.906982
Target:  5'- -uUCCGGCGGcggcgcaGCUGug-GGCUGUa -3'
miRNA:   3'- guAGGCCGUCuag----UGACuaaCUGACG- -5'
27338 3' -50.3 NC_005857.1 + 48007 0.66 0.899927
Target:  5'- ---gCGGCAGG-CGCgGAUUGAUuaUGCg -3'
miRNA:   3'- guagGCCGUCUaGUGaCUAACUG--ACG- -5'
27338 3' -50.3 NC_005857.1 + 1954 0.67 0.874592
Target:  5'- aUAUCCGGCAGGacuauaccaacaugUCACcggcaaUGAagGACUGg -3'
miRNA:   3'- -GUAGGCCGUCU--------------AGUG------ACUaaCUGACg -5'
27338 3' -50.3 NC_005857.1 + 22330 0.68 0.842663
Target:  5'- gAUCCGGCAuuuGGUCAgCUGg--GGCUGg -3'
miRNA:   3'- gUAGGCCGU---CUAGU-GACuaaCUGACg -5'
27338 3' -50.3 NC_005857.1 + 45001 0.68 0.823997
Target:  5'- --gCUGGCAGggCgGCUGAUUGGaaGCa -3'
miRNA:   3'- guaGGCCGUCuaG-UGACUAACUgaCG- -5'
27338 3' -50.3 NC_005857.1 + 13489 0.69 0.772631
Target:  5'- cCGUUCGGCGGAuucccugguacgUCGCUGAUaaggagcUGAUaUGCg -3'
miRNA:   3'- -GUAGGCCGUCU------------AGUGACUA-------ACUG-ACG- -5'
27338 3' -50.3 NC_005857.1 + 41372 0.7 0.74148
Target:  5'- -uUCUGGCGGAuUCGCUGGagacgGcGCUGCg -3'
miRNA:   3'- guAGGCCGUCU-AGUGACUaa---C-UGACG- -5'
27338 3' -50.3 NC_005857.1 + 50921 0.7 0.74148
Target:  5'- -cUCCGGCAGAcuuaugaccacUCAaaccCUGAUuucgccaucUGGCUGCc -3'
miRNA:   3'- guAGGCCGUCU-----------AGU----GACUA---------ACUGACG- -5'
27338 3' -50.3 NC_005857.1 + 15909 0.71 0.68557
Target:  5'- -uUgCGGCAGGUCGaUGcggUGGCUGCg -3'
miRNA:   3'- guAgGCCGUCUAGUgACua-ACUGACG- -5'
27338 3' -50.3 NC_005857.1 + 8207 1.12 0.001678
Target:  5'- cCAUCCGGCAGAUCACUGAUUGACUGCu -3'
miRNA:   3'- -GUAGGCCGUCUAGUGACUAACUGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.