miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27342 5' -51.1 NC_005857.1 + 34515 0.66 0.919043
Target:  5'- -aCCGGAGGccugGGCGGaGAAcgCGCu -3'
miRNA:   3'- ggGGCCUUUua--CCGCCgUUUuaGCGc -5'
27342 5' -51.1 NC_005857.1 + 10299 0.66 0.919043
Target:  5'- gCCUggCGGGAAAgccaGGCGGCGGuaaaaGCGa -3'
miRNA:   3'- -GGG--GCCUUUUa---CCGCCGUUuuag-CGC- -5'
27342 5' -51.1 NC_005857.1 + 33400 0.66 0.91265
Target:  5'- gCCUGGAGGAUGaGCguaGGCAuuuugccuaucAAGUCGuCGa -3'
miRNA:   3'- gGGGCCUUUUAC-CG---CCGU-----------UUUAGC-GC- -5'
27342 5' -51.1 NC_005857.1 + 7108 0.66 0.91265
Target:  5'- -aCCGGGGAGgcagacgGGCGGCAuGAUagaacugGCGa -3'
miRNA:   3'- ggGGCCUUUUa------CCGCCGUuUUAg------CGC- -5'
27342 5' -51.1 NC_005857.1 + 4434 0.66 0.905969
Target:  5'- cCCCUGGAAcAUGGCcuguGCuucuUCGCu -3'
miRNA:   3'- -GGGGCCUUuUACCGc---CGuuuuAGCGc -5'
27342 5' -51.1 NC_005857.1 + 31750 0.66 0.891753
Target:  5'- gCgCCGGuGAAccauuggacUGGCGGCAAAAggaagaauuaCGCGg -3'
miRNA:   3'- -GgGGCCuUUU---------ACCGCCGUUUUa---------GCGC- -5'
27342 5' -51.1 NC_005857.1 + 48528 0.66 0.891753
Target:  5'- gCgCCGGAGGAcguuugccagcUGGgGaGCAucaGAAUCGCGu -3'
miRNA:   3'- -GgGGCCUUUU-----------ACCgC-CGU---UUUAGCGC- -5'
27342 5' -51.1 NC_005857.1 + 9034 0.67 0.874037
Target:  5'- aUCCCGGAcgaagauggaagagGAAUGcGCGGCAGucauGAggGCa -3'
miRNA:   3'- -GGGGCCU--------------UUUAC-CGCCGUU----UUagCGc -5'
27342 5' -51.1 NC_005857.1 + 1794 0.68 0.805166
Target:  5'- gCgCUGGAAgcgacgGAUGGCgcagaGGCAGAcuAUCGCGa -3'
miRNA:   3'- -GgGGCCUU------UUACCG-----CCGUUU--UAGCGC- -5'
27342 5' -51.1 NC_005857.1 + 24356 0.69 0.785233
Target:  5'- --aCGGAAAGUGGUcugGGCGAg--CGCGg -3'
miRNA:   3'- gggGCCUUUUACCG---CCGUUuuaGCGC- -5'
27342 5' -51.1 NC_005857.1 + 20730 0.69 0.785233
Target:  5'- --aCGGAAAGUGGUcugGGCGAg--CGCGg -3'
miRNA:   3'- gggGCCUUUUACCG---CCGUUuuaGCGC- -5'
27342 5' -51.1 NC_005857.1 + 12627 0.69 0.77501
Target:  5'- uUCCUGGAucgucAUGGCGGCAcaAAGUCu-- -3'
miRNA:   3'- -GGGGCCUuu---UACCGCCGU--UUUAGcgc -5'
27342 5' -51.1 NC_005857.1 + 5755 0.71 0.670748
Target:  5'- aCCUCGGAGAG-GGCGGgAAAGagucagaaauuuacuUCGCu -3'
miRNA:   3'- -GGGGCCUUUUaCCGCCgUUUU---------------AGCGc -5'
27342 5' -51.1 NC_005857.1 + 48742 0.71 0.651613
Target:  5'- cCUCUGGAgauuuaccagcgaaGAGUGGUGcaGCAGAAUUGCGa -3'
miRNA:   3'- -GGGGCCU--------------UUUACCGC--CGUUUUAGCGC- -5'
27342 5' -51.1 NC_005857.1 + 17532 0.72 0.62113
Target:  5'- uUCCCGGAGGGgaGCGGCGAua-CGCa -3'
miRNA:   3'- -GGGGCCUUUUacCGCCGUUuuaGCGc -5'
27342 5' -51.1 NC_005857.1 + 4368 0.73 0.553933
Target:  5'- aCCCCGGAAGAUcGUGGUAAAcGUCaGCc -3'
miRNA:   3'- -GGGGCCUUUUAcCGCCGUUU-UAG-CGc -5'
27342 5' -51.1 NC_005857.1 + 47990 0.73 0.542912
Target:  5'- gCCCGcaauGAAGAUGaGCGGCAGg--CGCGg -3'
miRNA:   3'- gGGGC----CUUUUAC-CGCCGUUuuaGCGC- -5'
27342 5' -51.1 NC_005857.1 + 8651 0.74 0.489047
Target:  5'- uCCCCGGuca--GGCGGCGGAuauagaccGUUGCGc -3'
miRNA:   3'- -GGGGCCuuuuaCCGCCGUUU--------UAGCGC- -5'
27342 5' -51.1 NC_005857.1 + 43056 0.76 0.408596
Target:  5'- aCCCCGGAAAGccagcaGGCGGCAGGuuauacCGCc -3'
miRNA:   3'- -GGGGCCUUUUa-----CCGCCGUUUua----GCGc -5'
27342 5' -51.1 NC_005857.1 + 16443 1.11 0.002089
Target:  5'- cCCCCGGAAAAUGGCGGCAAAAUCGCGc -3'
miRNA:   3'- -GGGGCCUUUUACCGCCGUUUUAGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.