miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27343 3' -58.2 NC_005857.1 + 37582 0.66 0.564068
Target:  5'- aGCguaucGACCAGCgcggCGGGAaauuccaGAccaGCGCCa -3'
miRNA:   3'- aCGa----CUGGUCGag--GCCCUg------CU---UGCGG- -5'
27343 3' -58.2 NC_005857.1 + 10837 0.66 0.564068
Target:  5'- aGCUGAUgaaAGagaUUCGGGACGcuGACaGCCg -3'
miRNA:   3'- aCGACUGg--UCg--AGGCCCUGC--UUG-CGG- -5'
27343 3' -58.2 NC_005857.1 + 5972 0.66 0.553456
Target:  5'- cGCgGAUCAGCgacugguuaCGGGA-GAACGCg -3'
miRNA:   3'- aCGaCUGGUCGag-------GCCCUgCUUGCGg -5'
27343 3' -58.2 NC_005857.1 + 2923 0.66 0.536605
Target:  5'- cGCUGGauGGCUauaUCGGuuccucucccauucaGACGAACGCCg -3'
miRNA:   3'- aCGACUggUCGA---GGCC---------------CUGCUUGCGG- -5'
27343 3' -58.2 NC_005857.1 + 13708 0.66 0.522009
Target:  5'- cGCUGGCCAgGUUCCugcaGGGAaaauAGCGUCc -3'
miRNA:   3'- aCGACUGGU-CGAGG----CCCUgc--UUGCGG- -5'
27343 3' -58.2 NC_005857.1 + 1065 0.67 0.475233
Target:  5'- gGCUGGCCAucuGCcuggCUGGGGUGAagaccuuuuucgccuGCGCCa -3'
miRNA:   3'- aCGACUGGU---CGa---GGCCCUGCU---------------UGCGG- -5'
27343 3' -58.2 NC_005857.1 + 46759 0.67 0.471263
Target:  5'- gGCUGGucuuacucaugUUAGCcgCCGGGGugauauCGAGCGCCc -3'
miRNA:   3'- aCGACU-----------GGUCGa-GGCCCU------GCUUGCGG- -5'
27343 3' -58.2 NC_005857.1 + 13237 0.67 0.461411
Target:  5'- cUGCUGACguGUuucccUCCGGGAaguuuuGCGCa -3'
miRNA:   3'- -ACGACUGguCG-----AGGCCCUgcu---UGCGg -5'
27343 3' -58.2 NC_005857.1 + 34967 0.67 0.461411
Target:  5'- -aCUGACCGGCgaggCCGacAUGGAUGCCc -3'
miRNA:   3'- acGACUGGUCGa---GGCccUGCUUGCGG- -5'
27343 3' -58.2 NC_005857.1 + 30663 0.68 0.442041
Target:  5'- aGCUGgauagcaugauGCCAGauuuugCCaGGGGCG-ACGCCg -3'
miRNA:   3'- aCGAC-----------UGGUCga----GG-CCCUGCuUGCGG- -5'
27343 3' -58.2 NC_005857.1 + 30179 0.68 0.442041
Target:  5'- gGC-GACCAGauagCgCGgcaaGGGCGAACGCCa -3'
miRNA:   3'- aCGaCUGGUCga--G-GC----CCUGCUUGCGG- -5'
27343 3' -58.2 NC_005857.1 + 6153 0.68 0.432531
Target:  5'- aUGC-GGCCAGCaguaauaCCGGuGACGccacagauGGCGCCg -3'
miRNA:   3'- -ACGaCUGGUCGa------GGCC-CUGC--------UUGCGG- -5'
27343 3' -58.2 NC_005857.1 + 37630 0.68 0.42314
Target:  5'- cGCUGGCCca--CCuGGACGGGCGCa -3'
miRNA:   3'- aCGACUGGucgaGGcCCUGCUUGCGg -5'
27343 3' -58.2 NC_005857.1 + 22265 0.69 0.386837
Target:  5'- cGCUGAaugCAGCcgUUCGGGcCGGaaACGCCu -3'
miRNA:   3'- aCGACUg--GUCG--AGGCCCuGCU--UGCGG- -5'
27343 3' -58.2 NC_005857.1 + 8881 0.69 0.36099
Target:  5'- gGCUGGCCGaCcgCUGGGGCGAGC-CUg -3'
miRNA:   3'- aCGACUGGUcGa-GGCCCUGCUUGcGG- -5'
27343 3' -58.2 NC_005857.1 + 20080 0.7 0.328442
Target:  5'- cGCUGACCAGC-CaGGGGCaGGCGaUCa -3'
miRNA:   3'- aCGACUGGUCGaGgCCCUGcUUGC-GG- -5'
27343 3' -58.2 NC_005857.1 + 23707 0.7 0.328442
Target:  5'- cGCUGACCAGC-CaGGGGCaGGCGaUCa -3'
miRNA:   3'- aCGACUGGUCGaGgCCCUGcUUGC-GG- -5'
27343 3' -58.2 NC_005857.1 + 20110 0.72 0.256768
Target:  5'- aGCUGAaUAGCgacCUGGccacGACGAACGCCa -3'
miRNA:   3'- aCGACUgGUCGa--GGCC----CUGCUUGCGG- -5'
27343 3' -58.2 NC_005857.1 + 23737 0.72 0.256768
Target:  5'- aGCUGAaUAGCgacCUGGccacGACGAACGCCa -3'
miRNA:   3'- aCGACUgGUCGa--GGCC----CUGCUUGCGG- -5'
27343 3' -58.2 NC_005857.1 + 23002 0.73 0.214596
Target:  5'- aGCUGACCAGUgacCUGucGACGAccaACGCCa -3'
miRNA:   3'- aCGACUGGUCGa--GGCc-CUGCU---UGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.