Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 27348 | 3' | -51 | NC_005857.1 | + | 29707 | 0.66 | 0.891909 |
|
Target: 5'- ----aUGCUGUCuaAUUgaUGCCGCAg- -3' miRNA: 3'- cgaaaACGACAGcgUAG--ACGGCGUag -5' |
|||||||
| 27348 | 3' | -51 | NC_005857.1 | + | 26156 | 0.66 | 0.876218 |
|
Target: 5'- --aUUUGCUGcUCGCAUaaaauacguagCUGCCGgAUg -3' miRNA: 3'- cgaAAACGAC-AGCGUA-----------GACGGCgUAg -5' |
|||||||
| 27348 | 3' | -51 | NC_005857.1 | + | 36880 | 0.66 | 0.867952 |
|
Target: 5'- cGCgucgGCUGaaUCGCAaaUGCCGCGc- -3' miRNA: 3'- -CGaaaaCGAC--AGCGUagACGGCGUag -5' |
|||||||
| 27348 | 3' | -51 | NC_005857.1 | + | 8300 | 0.69 | 0.749454 |
|
Target: 5'- -----aGCUGaauggucUCGCGagccUCUGCCGCAUUa -3' miRNA: 3'- cgaaaaCGAC-------AGCGU----AGACGGCGUAG- -5' |
|||||||
| 27348 | 3' | -51 | NC_005857.1 | + | 18966 | 0.7 | 0.683311 |
|
Target: 5'- gGCUc--GCUuauUCGCuUCUGCCGUAUCg -3' miRNA: 3'- -CGAaaaCGAc--AGCGuAGACGGCGUAG- -5' |
|||||||
| 27348 | 3' | -51 | NC_005857.1 | + | 22850 | 1.11 | 0.001467 |
|
Target: 5'- gGCUUUUGCUGUCGCAUCUGCCGCAUCc -3' miRNA: 3'- -CGAAAACGACAGCGUAGACGGCGUAG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home