miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27349 5' -52.6 NC_005857.1 + 21469 0.66 0.789187
Target:  5'- -----aGGGGCGGUCGgUAUcgGACAg -3'
miRNA:   3'- aauuuaCCCCGCUAGCgGUGa-CUGUg -5'
27349 5' -52.6 NC_005857.1 + 22420 0.66 0.789187
Target:  5'- cUGAcgGGGcGCGAUCaUCAucCUGACAUg -3'
miRNA:   3'- aAUUuaCCC-CGCUAGcGGU--GACUGUG- -5'
27349 5' -52.6 NC_005857.1 + 9421 0.69 0.604455
Target:  5'- -gAAAUGGGGCGAacgacagaguacagCGCCagccaggcaGCUGAgGCg -3'
miRNA:   3'- aaUUUACCCCGCUa-------------GCGG---------UGACUgUG- -5'
27349 5' -52.6 NC_005857.1 + 34478 0.71 0.499298
Target:  5'- -gAAAUGGaGGCGGUaCGCUugUGGC-Ca -3'
miRNA:   3'- aaUUUACC-CCGCUA-GCGGugACUGuG- -5'
27349 5' -52.6 NC_005857.1 + 25419 1.08 0.001527
Target:  5'- gUUAAAUGGGGCGAUCGCCACUGACACg -3'
miRNA:   3'- -AAUUUACCCCGCUAGCGGUGACUGUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.