miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2735 3' -53.6 NC_001491.2 + 116640 0.66 0.972575
Target:  5'- gGGACGCCugcgugcUGGcCuGCCAgGCCGUcuUCg -3'
miRNA:   3'- -CCUGUGGu------ACCaGcUGGUgCGGUA--AG- -5'
2735 3' -53.6 NC_001491.2 + 58385 0.66 0.969696
Target:  5'- -cGCGCCGUugauuguacGGUCGAuCCAgGCCAg-- -3'
miRNA:   3'- ccUGUGGUA---------CCAGCU-GGUgCGGUaag -5'
2735 3' -53.6 NC_001491.2 + 82909 0.66 0.969696
Target:  5'- cGGGCugCugGUGGaCGAgCugGCCAa-- -3'
miRNA:   3'- -CCUGugG--UACCaGCUgGugCGGUaag -5'
2735 3' -53.6 NC_001491.2 + 137576 0.66 0.969696
Target:  5'- aGGCGCgCggGGUCGACCACcGCg---- -3'
miRNA:   3'- cCUGUG-GuaCCAGCUGGUG-CGguaag -5'
2735 3' -53.6 NC_001491.2 + 83021 0.66 0.966287
Target:  5'- -cGCACCAagGGUuucccacCGACCACGUCAc-- -3'
miRNA:   3'- ccUGUGGUa-CCA-------GCUGGUGCGGUaag -5'
2735 3' -53.6 NC_001491.2 + 143579 0.66 0.963303
Target:  5'- -cGCGCCAacggGGUucgUGAUCGCGCCGcUCa -3'
miRNA:   3'- ccUGUGGUa---CCA---GCUGGUGCGGUaAG- -5'
2735 3' -53.6 NC_001491.2 + 144886 0.66 0.963303
Target:  5'- gGGACGCCGgcUGGgCGGCagcCGCCGg-- -3'
miRNA:   3'- -CCUGUGGU--ACCaGCUGgu-GCGGUaag -5'
2735 3' -53.6 NC_001491.2 + 97573 0.66 0.959778
Target:  5'- cGGAgAgaCGUGGUCG-CCAcCGCC-UUCa -3'
miRNA:   3'- -CCUgUg-GUACCAGCuGGU-GCGGuAAG- -5'
2735 3' -53.6 NC_001491.2 + 94116 0.66 0.959778
Target:  5'- cGGugGCCG-GGUgcacccggccaaCGACCACGCUu--- -3'
miRNA:   3'- -CCugUGGUaCCA------------GCUGGUGCGGuaag -5'
2735 3' -53.6 NC_001491.2 + 114962 0.66 0.959778
Target:  5'- uGACuCCGcgGGUCGcCUGCGCCGUg- -3'
miRNA:   3'- cCUGuGGUa-CCAGCuGGUGCGGUAag -5'
2735 3' -53.6 NC_001491.2 + 31831 0.66 0.956025
Target:  5'- uGGGCACCAgaccugcggGGUCGGCCAaa-CAg-- -3'
miRNA:   3'- -CCUGUGGUa--------CCAGCUGGUgcgGUaag -5'
2735 3' -53.6 NC_001491.2 + 107126 0.67 0.942907
Target:  5'- gGGugGCCAguagaggUGGUC-ACCGgGCCAg-- -3'
miRNA:   3'- -CCugUGGU-------ACCAGcUGGUgCGGUaag -5'
2735 3' -53.6 NC_001491.2 + 5208 0.68 0.911518
Target:  5'- gGGACACgcUGGUCGAgCACGgUGUUa -3'
miRNA:   3'- -CCUGUGguACCAGCUgGUGCgGUAAg -5'
2735 3' -53.6 NC_001491.2 + 17915 0.68 0.911518
Target:  5'- cGGCGCCAUuGUUGACggaaGCGCCGggggUCa -3'
miRNA:   3'- cCUGUGGUAcCAGCUGg---UGCGGUa---AG- -5'
2735 3' -53.6 NC_001491.2 + 146525 0.69 0.871021
Target:  5'- uGGGCGCCcUGGUccccggagCGGCCGCgGCCGc-- -3'
miRNA:   3'- -CCUGUGGuACCA--------GCUGGUG-CGGUaag -5'
2735 3' -53.6 NC_001491.2 + 117018 0.73 0.698718
Target:  5'- gGGACGCCAUGG-CGGCCgggaacGCGCUc--- -3'
miRNA:   3'- -CCUGUGGUACCaGCUGG------UGCGGuaag -5'
2735 3' -53.6 NC_001491.2 + 145019 0.74 0.65766
Target:  5'- aGGGCgACCG-GGUCGGCCGCGUCc--- -3'
miRNA:   3'- -CCUG-UGGUaCCAGCUGGUGCGGuaag -5'
2735 3' -53.6 NC_001491.2 + 125645 0.75 0.585315
Target:  5'- -uACGCgGUGGUCGACCccgcGCGCC-UUCg -3'
miRNA:   3'- ccUGUGgUACCAGCUGG----UGCGGuAAG- -5'
2735 3' -53.6 NC_001491.2 + 101697 0.76 0.524527
Target:  5'- uGGAgGCCGUGGUgGAgCugGCCAg-- -3'
miRNA:   3'- -CCUgUGGUACCAgCUgGugCGGUaag -5'
2735 3' -53.6 NC_001491.2 + 140151 0.79 0.385769
Target:  5'- gGGACuuuGCCGcGGUCGugCGCGCCGUgUCg -3'
miRNA:   3'- -CCUG---UGGUaCCAGCugGUGCGGUA-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.