Results 1 - 20 of 20 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2735 | 3' | -53.6 | NC_001491.2 | + | 5208 | 0.68 | 0.911518 |
Target: 5'- gGGACACgcUGGUCGAgCACGgUGUUa -3' miRNA: 3'- -CCUGUGguACCAGCUgGUGCgGUAAg -5' |
|||||||
2735 | 3' | -53.6 | NC_001491.2 | + | 17915 | 0.68 | 0.911518 |
Target: 5'- cGGCGCCAUuGUUGACggaaGCGCCGggggUCa -3' miRNA: 3'- cCUGUGGUAcCAGCUGg---UGCGGUa---AG- -5' |
|||||||
2735 | 3' | -53.6 | NC_001491.2 | + | 31831 | 0.66 | 0.956025 |
Target: 5'- uGGGCACCAgaccugcggGGUCGGCCAaa-CAg-- -3' miRNA: 3'- -CCUGUGGUa--------CCAGCUGGUgcgGUaag -5' |
|||||||
2735 | 3' | -53.6 | NC_001491.2 | + | 58385 | 0.66 | 0.969696 |
Target: 5'- -cGCGCCGUugauuguacGGUCGAuCCAgGCCAg-- -3' miRNA: 3'- ccUGUGGUA---------CCAGCU-GGUgCGGUaag -5' |
|||||||
2735 | 3' | -53.6 | NC_001491.2 | + | 82909 | 0.66 | 0.969696 |
Target: 5'- cGGGCugCugGUGGaCGAgCugGCCAa-- -3' miRNA: 3'- -CCUGugG--UACCaGCUgGugCGGUaag -5' |
|||||||
2735 | 3' | -53.6 | NC_001491.2 | + | 83021 | 0.66 | 0.966287 |
Target: 5'- -cGCACCAagGGUuucccacCGACCACGUCAc-- -3' miRNA: 3'- ccUGUGGUa-CCA-------GCUGGUGCGGUaag -5' |
|||||||
2735 | 3' | -53.6 | NC_001491.2 | + | 94116 | 0.66 | 0.959778 |
Target: 5'- cGGugGCCG-GGUgcacccggccaaCGACCACGCUu--- -3' miRNA: 3'- -CCugUGGUaCCA------------GCUGGUGCGGuaag -5' |
|||||||
2735 | 3' | -53.6 | NC_001491.2 | + | 97573 | 0.66 | 0.959778 |
Target: 5'- cGGAgAgaCGUGGUCG-CCAcCGCC-UUCa -3' miRNA: 3'- -CCUgUg-GUACCAGCuGGU-GCGGuAAG- -5' |
|||||||
2735 | 3' | -53.6 | NC_001491.2 | + | 101697 | 0.76 | 0.524527 |
Target: 5'- uGGAgGCCGUGGUgGAgCugGCCAg-- -3' miRNA: 3'- -CCUgUGGUACCAgCUgGugCGGUaag -5' |
|||||||
2735 | 3' | -53.6 | NC_001491.2 | + | 107126 | 0.67 | 0.942907 |
Target: 5'- gGGugGCCAguagaggUGGUC-ACCGgGCCAg-- -3' miRNA: 3'- -CCugUGGU-------ACCAGcUGGUgCGGUaag -5' |
|||||||
2735 | 3' | -53.6 | NC_001491.2 | + | 114962 | 0.66 | 0.959778 |
Target: 5'- uGACuCCGcgGGUCGcCUGCGCCGUg- -3' miRNA: 3'- cCUGuGGUa-CCAGCuGGUGCGGUAag -5' |
|||||||
2735 | 3' | -53.6 | NC_001491.2 | + | 116640 | 0.66 | 0.972575 |
Target: 5'- gGGACGCCugcgugcUGGcCuGCCAgGCCGUcuUCg -3' miRNA: 3'- -CCUGUGGu------ACCaGcUGGUgCGGUA--AG- -5' |
|||||||
2735 | 3' | -53.6 | NC_001491.2 | + | 117018 | 0.73 | 0.698718 |
Target: 5'- gGGACGCCAUGG-CGGCCgggaacGCGCUc--- -3' miRNA: 3'- -CCUGUGGUACCaGCUGG------UGCGGuaag -5' |
|||||||
2735 | 3' | -53.6 | NC_001491.2 | + | 125645 | 0.75 | 0.585315 |
Target: 5'- -uACGCgGUGGUCGACCccgcGCGCC-UUCg -3' miRNA: 3'- ccUGUGgUACCAGCUGG----UGCGGuAAG- -5' |
|||||||
2735 | 3' | -53.6 | NC_001491.2 | + | 137576 | 0.66 | 0.969696 |
Target: 5'- aGGCGCgCggGGUCGACCACcGCg---- -3' miRNA: 3'- cCUGUG-GuaCCAGCUGGUG-CGguaag -5' |
|||||||
2735 | 3' | -53.6 | NC_001491.2 | + | 140151 | 0.79 | 0.385769 |
Target: 5'- gGGACuuuGCCGcGGUCGugCGCGCCGUgUCg -3' miRNA: 3'- -CCUG---UGGUaCCAGCugGUGCGGUA-AG- -5' |
|||||||
2735 | 3' | -53.6 | NC_001491.2 | + | 143579 | 0.66 | 0.963303 |
Target: 5'- -cGCGCCAacggGGUucgUGAUCGCGCCGcUCa -3' miRNA: 3'- ccUGUGGUa---CCA---GCUGGUGCGGUaAG- -5' |
|||||||
2735 | 3' | -53.6 | NC_001491.2 | + | 144886 | 0.66 | 0.963303 |
Target: 5'- gGGACGCCGgcUGGgCGGCagcCGCCGg-- -3' miRNA: 3'- -CCUGUGGU--ACCaGCUGgu-GCGGUaag -5' |
|||||||
2735 | 3' | -53.6 | NC_001491.2 | + | 145019 | 0.74 | 0.65766 |
Target: 5'- aGGGCgACCG-GGUCGGCCGCGUCc--- -3' miRNA: 3'- -CCUG-UGGUaCCAGCUGGUGCGGuaag -5' |
|||||||
2735 | 3' | -53.6 | NC_001491.2 | + | 146525 | 0.69 | 0.871021 |
Target: 5'- uGGGCGCCcUGGUccccggagCGGCCGCgGCCGc-- -3' miRNA: 3'- -CCUGUGGuACCA--------GCUGGUG-CGGUaag -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home