miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27350 5' -50.7 NC_005857.1 + 29345 0.66 0.904273
Target:  5'- uGUGAGCgAGGUCGagGCaaUCGAUGCCu- -3'
miRNA:   3'- uUAUUCG-UUCAGUa-CG--AGCUGCGGcg -5'
27350 5' -50.7 NC_005857.1 + 2228 0.66 0.903564
Target:  5'- ----cGCGAGUCAUGg-CGuuaaauaACGCCGUg -3'
miRNA:   3'- uuauuCGUUCAGUACgaGC-------UGCGGCG- -5'
27350 5' -50.7 NC_005857.1 + 14020 0.66 0.88954
Target:  5'- ----cGCGAuaaUCGUGCaacUCGAUGCCGUg -3'
miRNA:   3'- uuauuCGUUc--AGUACG---AGCUGCGGCG- -5'
27350 5' -50.7 NC_005857.1 + 30622 0.66 0.88954
Target:  5'- aAAUGucGGCGAGgagaAUGCccgccuagCGGCGCUGCa -3'
miRNA:   3'- -UUAU--UCGUUCag--UACGa-------GCUGCGGCG- -5'
27350 5' -50.7 NC_005857.1 + 15126 0.66 0.873647
Target:  5'- --aAAGCA--UC-UGgaCGACGCCGCc -3'
miRNA:   3'- uuaUUCGUucAGuACgaGCUGCGGCG- -5'
27350 5' -50.7 NC_005857.1 + 51424 0.67 0.829228
Target:  5'- cAUAAuGCGAGcaGUGgUCGuCGCCGCa -3'
miRNA:   3'- uUAUU-CGUUCagUACgAGCuGCGGCG- -5'
27350 5' -50.7 NC_005857.1 + 44105 0.68 0.809782
Target:  5'- ---uAGUAAGUagccugaauauuUAUGCUUG-CGCCGCa -3'
miRNA:   3'- uuauUCGUUCA------------GUACGAGCuGCGGCG- -5'
27350 5' -50.7 NC_005857.1 + 15906 0.71 0.62162
Target:  5'- ---cGGCAGGUCgAUGCg-GugGCUGCg -3'
miRNA:   3'- uuauUCGUUCAG-UACGagCugCGGCG- -5'
27350 5' -50.7 NC_005857.1 + 5043 0.72 0.586989
Target:  5'- ----uGCGAGUCAUGC-CuGCGCCGg -3'
miRNA:   3'- uuauuCGUUCAGUACGaGcUGCGGCg -5'
27350 5' -50.7 NC_005857.1 + 36781 0.73 0.486305
Target:  5'- gAAUGAGCGagaAGUC-UGCgCGGCGCgGCa -3'
miRNA:   3'- -UUAUUCGU---UCAGuACGaGCUGCGgCG- -5'
27350 5' -50.7 NC_005857.1 + 26794 1.11 0.00163
Target:  5'- gAAUAAGCAAGUCAUGCUCGACGCCGCa -3'
miRNA:   3'- -UUAUUCGUUCAGUACGAGCUGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.