miRNA display CGI

Results 1 - 13 of 13 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
27354	3'	-54.1	NC_005857.1	+	30486	0.66	0.734499
	Target:  5'- cGGCGGUcaucgccuaagAAAGUUuuuaCCCacggauuaaaaGCUGUAGCg -3' miRNA:   3'- aCCGCCA-----------UUUCAAuc--GGG-----------CGACGUCG- -5'
27354	3'	-54.1	NC_005857.1	+	14033	0.66	0.701665
	Target:  5'- gUGGUuuccGUGAAuuuGaUGGCCCGCcGCAGCc -3' miRNA:   3'- -ACCGc---CAUUU---CaAUCGGGCGaCGUCG- -5'
27354	3'	-54.1	NC_005857.1	+	30628	0.67	0.690561
	Target:  5'- cGGCGa-GGAGaauGCCCGCcuaGCGGCg -3' miRNA:   3'- aCCGCcaUUUCaauCGGGCGa--CGUCG- -5'
27354	3'	-54.1	NC_005857.1	+	21869	0.67	0.656944
	Target:  5'- cGcGUGGUGAGGcu-GCCgauggcguuaGCUGCGGCa -3' miRNA:   3'- aC-CGCCAUUUCaauCGGg---------CGACGUCG- -5'
27354	3'	-54.1	NC_005857.1	+	48289	0.68	0.634392
	Target:  5'- gGuGCGGUAc----AGCCCGCUucaagcGCGGCa -3' miRNA:   3'- aC-CGCCAUuucaaUCGGGCGA------CGUCG- -5'
27354	3'	-54.1	NC_005857.1	+	15935	0.68	0.578152
	Target:  5'- aGGCGGagcguccAGGUgcucCCCGCUuGCGGCa -3' miRNA:   3'- aCCGCCau-----UUCAauc-GGGCGA-CGUCG- -5'
27354	3'	-54.1	NC_005857.1	+	3350	0.69	0.567008
	Target:  5'- uUGGCcuGGuUGAAGcggcaugaaGGCgCGCUGCAGCg -3' miRNA:   3'- -ACCG--CC-AUUUCaa-------UCGgGCGACGUCG- -5'
27354	3'	-54.1	NC_005857.1	+	2985	0.7	0.490985
	Target:  5'- cUGGCGGUGGAG--AGCauGCaucUGCAGUa -3' miRNA:   3'- -ACCGCCAUUUCaaUCGggCG---ACGUCG- -5'
27354	3'	-54.1	NC_005857.1	+	45453	0.7	0.480494
	Target:  5'- gGGCGGUuuuuUUAuGCCuugaaaaugggCGCUGCAGCa -3' miRNA:   3'- aCCGCCAuuucAAU-CGG-----------GCGACGUCG- -5'
27354	3'	-54.1	NC_005857.1	+	42588	0.7	0.470113
	Target:  5'- aGGCGGUGuagccAGUcAGCCaGCUuCAGCa -3' miRNA:   3'- aCCGCCAUu----UCAaUCGGgCGAcGUCG- -5'
27354	3'	-54.1	NC_005857.1	+	13248	0.71	0.420031
	Target:  5'- -aGCGGUGGAGUUcacucucucaAGCCCGauggacCUGCAGg -3' miRNA:   3'- acCGCCAUUUCAA----------UCGGGC------GACGUCg -5'
27354	3'	-54.1	NC_005857.1	+	34523	0.73	0.313294
	Target:  5'- gUGGCGGUAccGgaGGCCugggcggagaacgCGCUGcCAGCa -3' miRNA:   3'- -ACCGCCAUuuCaaUCGG-------------GCGAC-GUCG- -5'
27354	3'	-54.1	NC_005857.1	+	32759	1.13	0.000548
	Target:  5'- uUGGCGGUAAAGUUAGCCCGCUGCAGCa -3' miRNA:   3'- -ACCGCCAUUUCAAUCGGGCGACGUCG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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