miRNA display CGI


Results 1 - 13 of 13 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27355 5' -51.7 NC_005857.1 + 25090 0.66 0.866194
Target:  5'- -gUUGGC-GGCUccaGCGGCuGGCGCGu -3'
miRNA:   3'- caAGCUGuUCGAug-CGCCGuUUGCGC- -5'
27355 5' -51.7 NC_005857.1 + 15907 0.66 0.857755
Target:  5'- --gCGGCAGGUcgAUGCGGUGGcuGCGCu -3'
miRNA:   3'- caaGCUGUUCGa-UGCGCCGUU--UGCGc -5'
27355 5' -51.7 NC_005857.1 + 37623 0.67 0.840132
Target:  5'- -gUCGugAcuGGUcACGCGGCGAAuauCGCa -3'
miRNA:   3'- caAGCugU--UCGaUGCGCCGUUU---GCGc -5'
27355 5' -51.7 NC_005857.1 + 36787 0.67 0.840132
Target:  5'- --gCGAgAAGuCUGCGCGGCGcggcauuUGCGa -3'
miRNA:   3'- caaGCUgUUC-GAUGCGCCGUuu-----GCGC- -5'
27355 5' -51.7 NC_005857.1 + 6659 0.69 0.739807
Target:  5'- -cUCGAUGcuccGCUGCGCGGCGuuaaccaucuGCGUGa -3'
miRNA:   3'- caAGCUGUu---CGAUGCGCCGUu---------UGCGC- -5'
27355 5' -51.7 NC_005857.1 + 47041 0.69 0.739807
Target:  5'- --cUGGCGAGCaagcaggaUGCGCGGCGAuAUGCu -3'
miRNA:   3'- caaGCUGUUCG--------AUGCGCCGUU-UGCGc -5'
27355 5' -51.7 NC_005857.1 + 17402 0.7 0.639283
Target:  5'- -cUCGAacgaggugguCGAGCUGCGCGGC--ACGUu -3'
miRNA:   3'- caAGCU----------GUUCGAUGCGCCGuuUGCGc -5'
27355 5' -51.7 NC_005857.1 + 42787 0.71 0.593912
Target:  5'- gGUUCGGCGu-CUAuUGCGGCcAGCGCGa -3'
miRNA:   3'- -CAAGCUGUucGAU-GCGCCGuUUGCGC- -5'
27355 5' -51.7 NC_005857.1 + 2662 0.72 0.53803
Target:  5'- aGUUCGACAggcAGCUGCGCGaCGGAcucCGCc -3'
miRNA:   3'- -CAAGCUGU---UCGAUGCGCcGUUU---GCGc -5'
27355 5' -51.7 NC_005857.1 + 30183 0.73 0.484063
Target:  5'- aUUCGGCGaccAGauaGCGCGGCAAGgGCGa -3'
miRNA:   3'- cAAGCUGU---UCga-UGCGCCGUUUgCGC- -5'
27355 5' -51.7 NC_005857.1 + 22759 0.74 0.432828
Target:  5'- --gCGGCcAGCgcucaggAUGCGGCAGAUGCGa -3'
miRNA:   3'- caaGCUGuUCGa------UGCGCCGUUUGCGC- -5'
27355 5' -51.7 NC_005857.1 + 35108 0.74 0.413235
Target:  5'- --gCGACcGGCcACGCGGUAAGCGUa -3'
miRNA:   3'- caaGCUGuUCGaUGCGCCGUUUGCGc -5'
27355 5' -51.7 NC_005857.1 + 35783 1.1 0.001931
Target:  5'- gGUUCGACAAGCUACGCGGCAAACGCGa -3'
miRNA:   3'- -CAAGCUGUUCGAUGCGCCGUUUGCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.