miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27357 3' -38.7 NC_005857.1 + 38468 1.16 0.03278
Target:  5'- gCCGAAAAAAGACGAAAAAAAACCCGAg -3'
miRNA:   3'- -GGCUUUUUUCUGCUUUUUUUUGGGCU- -5'
27357 3' -38.7 NC_005857.1 + 50194 0.76 0.99616
Target:  5'- aCCGAu--AAGGCGAAAaaGAAAACCUa- -3'
miRNA:   3'- -GGCUuuuUUCUGCUUU--UUUUUGGGcu -5'
27357 3' -38.7 NC_005857.1 + 817 0.75 0.998268
Target:  5'- aCGAAAAAGGAC---AAGAAACgCCGAu -3'
miRNA:   3'- gGCUUUUUUCUGcuuUUUUUUG-GGCU- -5'
27357 3' -38.7 NC_005857.1 + 33682 0.75 0.998884
Target:  5'- gCUGGAAGAAGugGAGcuGAAGCCa-- -3'
miRNA:   3'- -GGCUUUUUUCugCUUuuUUUUGGgcu -5'
27357 3' -38.7 NC_005857.1 + 9036 0.73 0.999814
Target:  5'- cCCGGAcGAAGAUGGAAGAGGaauGCgCGGc -3'
miRNA:   3'- -GGCUUuUUUCUGCUUUUUUU---UGgGCU- -5'
27357 3' -38.7 NC_005857.1 + 45097 0.73 0.999814
Target:  5'- -aGGGAAGAGAUGAacguaAAAGAGAUCCGc -3'
miRNA:   3'- ggCUUUUUUCUGCU-----UUUUUUUGGGCu -5'
27357 3' -38.7 NC_005857.1 + 7034 0.73 0.999861
Target:  5'- aCUGGAAAAucACGAcAAAAGACCUGGu -3'
miRNA:   3'- -GGCUUUUUucUGCUuUUUUUUGGGCU- -5'
27357 3' -38.7 NC_005857.1 + 45796 0.72 0.999898
Target:  5'- gCCGAAuucuGGCGGGugcuGAAGCCCGc -3'
miRNA:   3'- -GGCUUuuuuCUGCUUuu--UUUUGGGCu -5'
27357 3' -38.7 NC_005857.1 + 31017 0.72 0.999925
Target:  5'- aCUGGAGGAagcGGGCGAcgcuGAAGAGgCCGAg -3'
miRNA:   3'- -GGCUUUUU---UCUGCUu---UUUUUUgGGCU- -5'
27357 3' -38.7 NC_005857.1 + 8826 0.71 0.999991
Target:  5'- gCUGGAGGAAG-CGGAAAAAAACUa-- -3'
miRNA:   3'- -GGCUUUUUUCuGCUUUUUUUUGGgcu -5'
27357 3' -38.7 NC_005857.1 + 5690 0.71 0.999991
Target:  5'- cCCGGAAAu-GGCGcAAGGGAugCUGAa -3'
miRNA:   3'- -GGCUUUUuuCUGCuUUUUUUugGGCU- -5'
27357 3' -38.7 NC_005857.1 + 2766 0.7 0.999996
Target:  5'- aUCGAccgu-GAUGGAAAAGGcuACCCGAa -3'
miRNA:   3'- -GGCUuuuuuCUGCUUUUUUU--UGGGCU- -5'
27357 3' -38.7 NC_005857.1 + 21317 0.7 0.999996
Target:  5'- gCUGAcgc-GGACGGGAAAAucCCCGGc -3'
miRNA:   3'- -GGCUuuuuUCUGCUUUUUUuuGGGCU- -5'
27357 3' -38.7 NC_005857.1 + 2813 0.7 0.999996
Target:  5'- cCCGAAAAAGG-UGAuuguucuGAAGGGGCCgGAc -3'
miRNA:   3'- -GGCUUUUUUCuGCU-------UUUUUUUGGgCU- -5'
27357 3' -38.7 NC_005857.1 + 19967 0.69 0.999999
Target:  5'- gCCGAAGuucGAG-CGggGAAAuGugCCGAc -3'
miRNA:   3'- -GGCUUUu--UUCuGCuuUUUU-UugGGCU- -5'
27357 3' -38.7 NC_005857.1 + 23594 0.69 0.999999
Target:  5'- gCCGAAGuucGAG-CGggGAAAuGugCCGAc -3'
miRNA:   3'- -GGCUUUu--UUCuGCuuUUUU-UugGGCU- -5'
27357 3' -38.7 NC_005857.1 + 12155 0.66 1
Target:  5'- gCGuuuuu-GGCGAAGcAGGACCUGAg -3'
miRNA:   3'- gGCuuuuuuCUGCUUUuUUUUGGGCU- -5'
27357 3' -38.7 NC_005857.1 + 22356 0.67 1
Target:  5'- uCCGcu-GGAGGCGuuucc-GGCCCGAa -3'
miRNA:   3'- -GGCuuuUUUCUGCuuuuuuUUGGGCU- -5'
27357 3' -38.7 NC_005857.1 + 11638 0.67 1
Target:  5'- gCGcAGGGAGACGAGAGGAucGACuucaCCGGc -3'
miRNA:   3'- gGCuUUUUUCUGCUUUUUU--UUG----GGCU- -5'
27357 3' -38.7 NC_005857.1 + 44340 0.67 1
Target:  5'- gUCGAAAugcuguauGAGAUGAGAGAGAAggCCGGu -3'
miRNA:   3'- -GGCUUUu-------UUCUGCUUUUUUUUg-GGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.