miRNA display CGI

Results 1 - 8 of 8 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
27359	3'	-59.3	NC_005857.1	+	42088	0.66	0.483853
	Target:  5'- aCACGaaaaAGaCCUGCAUcuGGGCUGGCGGu -3' miRNA:   3'- -GUGCg---UCcGGACGUGc-CUCGACUGCU- -5'
27359	3'	-59.3	NC_005857.1	+	22997	0.67	0.406918
	Target:  5'- -cUGCAGcGUCUGCACcGuGCUGGCGu -3' miRNA:   3'- guGCGUC-CGGACGUGcCuCGACUGCu -5'
27359	3'	-59.3	NC_005857.1	+	9552	0.67	0.406005
	Target:  5'- gGCGCAGGCC-GCAggaacgacgcuccCGGAugcgacccgaacGCUGGCGc -3' miRNA:   3'- gUGCGUCCGGaCGU-------------GCCU------------CGACUGCu -5'
27359	3'	-59.3	NC_005857.1	+	20237	0.68	0.371435
	Target:  5'- aACGa--GCCUGCagaACGG-GCUGACGAc -3' miRNA:   3'- gUGCgucCGGACG---UGCCuCGACUGCU- -5'
27359	3'	-59.3	NC_005857.1	+	23864	0.68	0.371435
	Target:  5'- aACGa--GCCUGCagaACGG-GCUGACGAc -3' miRNA:   3'- gUGCgucCGGACG---UGCCuCGACUGCU- -5'
27359	3'	-59.3	NC_005857.1	+	9274	0.69	0.314594
	Target:  5'- --aGCAGGCUg--GCGGGGCUGGCa- -3' miRNA:   3'- gugCGUCCGGacgUGCCUCGACUGcu -5'
27359	3'	-59.3	NC_005857.1	+	47466	0.72	0.194064
	Target:  5'- gGCGCGGGCCU-CACGG-GUUGcCGGa -3' miRNA:   3'- gUGCGUCCGGAcGUGCCuCGACuGCU- -5'
27359	3'	-59.3	NC_005857.1	+	3963	1.08	0.000405
	Target:  5'- uCACGCAGGCCUGCACGGAGCUGACGAg -3' miRNA:   3'- -GUGCGUCCGGACGUGCCUCGACUGCU- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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