miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2736 3' -53.3 NC_001491.2 + 1640 0.66 0.952833
Target:  5'- cGAGCCUAGCGAAGGCaugGACCuuCg -3'
miRNA:   3'- uUUCGGGUCGUUUUCGcg-UUGGugGa -5'
2736 3' -53.3 NC_001491.2 + 33704 0.66 0.952833
Target:  5'- --cGUCCAGUuuuGGUGUAugCGCCa -3'
miRNA:   3'- uuuCGGGUCGuuuUCGCGUugGUGGa -5'
2736 3' -53.3 NC_001491.2 + 50017 0.66 0.952833
Target:  5'- gGAGGCCCAauacuccuccacGCAGGcccuGCGCGACUgacucGCCa -3'
miRNA:   3'- -UUUCGGGU------------CGUUUu---CGCGUUGG-----UGGa -5'
2736 3' -53.3 NC_001491.2 + 144844 0.66 0.952833
Target:  5'- --cGCugCCGGCGGccGAGgGCGACCGCUUc -3'
miRNA:   3'- uuuCG--GGUCGUU--UUCgCGUUGGUGGA- -5'
2736 3' -53.3 NC_001491.2 + 148639 0.66 0.952833
Target:  5'- -cGGCCgcaGGCGAGguacacggGGCGCAGCCagGCCc -3'
miRNA:   3'- uuUCGGg--UCGUUU--------UCGCGUUGG--UGGa -5'
2736 3' -53.3 NC_001491.2 + 116185 0.66 0.951561
Target:  5'- --cGCCCGGCGGcGAGCccuucuccggcuccGCGGCCGCg- -3'
miRNA:   3'- uuuCGGGUCGUU-UUCG--------------CGUUGGUGga -5'
2736 3' -53.3 NC_001491.2 + 23376 0.66 0.948504
Target:  5'- -cGGCCCAcgcugucuGCAu-GGUGCuuGCCGCCUu -3'
miRNA:   3'- uuUCGGGU--------CGUuuUCGCGu-UGGUGGA- -5'
2736 3' -53.3 NC_001491.2 + 67460 0.66 0.943919
Target:  5'- -uAGCCCuccAGUAcGAGCGCGGCCugggGCUg -3'
miRNA:   3'- uuUCGGG---UCGUuUUCGCGUUGG----UGGa -5'
2736 3' -53.3 NC_001491.2 + 20074 0.66 0.943919
Target:  5'- --cGCCCGGCAcggcuGGGGCGCAugUAg-- -3'
miRNA:   3'- uuuCGGGUCGU-----UUUCGCGUugGUgga -5'
2736 3' -53.3 NC_001491.2 + 118909 0.66 0.943919
Target:  5'- --uGCCuCGGCGGAgcucGGCGCGGaaGCCUg -3'
miRNA:   3'- uuuCGG-GUCGUUU----UCGCGUUggUGGA- -5'
2736 3' -53.3 NC_001491.2 + 110866 0.66 0.943919
Target:  5'- -cGGCCCAuGCGGccuAGaUGCAGCCugCg -3'
miRNA:   3'- uuUCGGGU-CGUUu--UC-GCGUUGGugGa -5'
2736 3' -53.3 NC_001491.2 + 123042 0.66 0.943919
Target:  5'- cGGAGCgcggCAGCGAGAcCGCGugCGCCg -3'
miRNA:   3'- -UUUCGg---GUCGUUUUcGCGUugGUGGa -5'
2736 3' -53.3 NC_001491.2 + 118401 0.66 0.943446
Target:  5'- cGAGCCCcGCGGAgggaaGGCGaagcggucgcccuCGGCCGCCg -3'
miRNA:   3'- uUUCGGGuCGUUU-----UCGC-------------GUUGGUGGa -5'
2736 3' -53.3 NC_001491.2 + 52934 0.66 0.939075
Target:  5'- -uGGCCaugcgaaaggCGGUGAGGGCGCGAauccCCACCa -3'
miRNA:   3'- uuUCGG----------GUCGUUUUCGCGUU----GGUGGa -5'
2736 3' -53.3 NC_001491.2 + 141860 0.66 0.939075
Target:  5'- -cGGCCCAGCcc-AGCuccgGCGACC-CCg -3'
miRNA:   3'- uuUCGGGUCGuuuUCG----CGUUGGuGGa -5'
2736 3' -53.3 NC_001491.2 + 141835 0.66 0.939075
Target:  5'- -cGGCCCAGCcc-AGCuccgGCGACC-CCg -3'
miRNA:   3'- uuUCGGGUCGuuuUCG----CGUUGGuGGa -5'
2736 3' -53.3 NC_001491.2 + 41431 0.66 0.939075
Target:  5'- --uGCCCAGCAAcAGC---GCCGCUUg -3'
miRNA:   3'- uuuCGGGUCGUUuUCGcguUGGUGGA- -5'
2736 3' -53.3 NC_001491.2 + 117797 0.66 0.939075
Target:  5'- -cGGCuCCAGCuucGGCGCccgcucccAGCCGCCc -3'
miRNA:   3'- uuUCG-GGUCGuuuUCGCG--------UUGGUGGa -5'
2736 3' -53.3 NC_001491.2 + 882 0.66 0.939075
Target:  5'- aGGGGCCCAGCAuagcAGUG-AGCC-CCa -3'
miRNA:   3'- -UUUCGGGUCGUuu--UCGCgUUGGuGGa -5'
2736 3' -53.3 NC_001491.2 + 11493 0.66 0.933971
Target:  5'- uAAGGgUCAGCGcguuGCGCAGCUACUg -3'
miRNA:   3'- -UUUCgGGUCGUuuu-CGCGUUGGUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.