miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2736 3' -53.3 NC_001491.2 + 116185 0.66 0.951561
Target:  5'- --cGCCCGGCGGcGAGCccuucuccggcuccGCGGCCGCg- -3'
miRNA:   3'- uuuCGGGUCGUU-UUCG--------------CGUUGGUGga -5'
2736 3' -53.3 NC_001491.2 + 23376 0.66 0.948504
Target:  5'- -cGGCCCAcgcugucuGCAu-GGUGCuuGCCGCCUu -3'
miRNA:   3'- uuUCGGGU--------CGUuuUCGCGu-UGGUGGA- -5'
2736 3' -53.3 NC_001491.2 + 123042 0.66 0.943919
Target:  5'- cGGAGCgcggCAGCGAGAcCGCGugCGCCg -3'
miRNA:   3'- -UUUCGg---GUCGUUUUcGCGUugGUGGa -5'
2736 3' -53.3 NC_001491.2 + 110866 0.66 0.943919
Target:  5'- -cGGCCCAuGCGGccuAGaUGCAGCCugCg -3'
miRNA:   3'- uuUCGGGU-CGUUu--UC-GCGUUGGugGa -5'
2736 3' -53.3 NC_001491.2 + 118909 0.66 0.943919
Target:  5'- --uGCCuCGGCGGAgcucGGCGCGGaaGCCUg -3'
miRNA:   3'- uuuCGG-GUCGUUU----UCGCGUUggUGGA- -5'
2736 3' -53.3 NC_001491.2 + 20074 0.66 0.943919
Target:  5'- --cGCCCGGCAcggcuGGGGCGCAugUAg-- -3'
miRNA:   3'- uuuCGGGUCGU-----UUUCGCGUugGUgga -5'
2736 3' -53.3 NC_001491.2 + 67460 0.66 0.943919
Target:  5'- -uAGCCCuccAGUAcGAGCGCGGCCugggGCUg -3'
miRNA:   3'- uuUCGGG---UCGUuUUCGCGUUGG----UGGa -5'
2736 3' -53.3 NC_001491.2 + 3997 0.67 0.91093
Target:  5'- --cGCCCcGUuu-AGCGCcGCCACCc -3'
miRNA:   3'- uuuCGGGuCGuuuUCGCGuUGGUGGa -5'
2736 3' -53.3 NC_001491.2 + 100925 0.67 0.91093
Target:  5'- -cAGCCCGGUgcGAGCuCAGCgGCCc -3'
miRNA:   3'- uuUCGGGUCGuuUUCGcGUUGgUGGa -5'
2736 3' -53.3 NC_001491.2 + 145788 0.67 0.904516
Target:  5'- --cGCCCGG----GGCGCAcgaaGCCGCCg -3'
miRNA:   3'- uuuCGGGUCguuuUCGCGU----UGGUGGa -5'
2736 3' -53.3 NC_001491.2 + 114639 0.67 0.904516
Target:  5'- gAGGGCgCCGcGCAGAGccaccGCGCGGCCaACCg -3'
miRNA:   3'- -UUUCG-GGU-CGUUUU-----CGCGUUGG-UGGa -5'
2736 3' -53.3 NC_001491.2 + 139736 0.67 0.899873
Target:  5'- cGAGCCCgAGCuguucccccgccaCGCAGCCGCCg -3'
miRNA:   3'- uUUCGGG-UCGuuuuc--------GCGUUGGUGGa -5'
2736 3' -53.3 NC_001491.2 + 115530 0.67 0.91093
Target:  5'- cGAGGCCUGGCGcccGGCGC--UCACCUu -3'
miRNA:   3'- -UUUCGGGUCGUuu-UCGCGuuGGUGGA- -5'
2736 3' -53.3 NC_001491.2 + 146620 0.67 0.915265
Target:  5'- --cGCCCcgccGCGGAGGCGCAggagggccucgaagACgGCCUg -3'
miRNA:   3'- uuuCGGGu---CGUUUUCGCGU--------------UGgUGGA- -5'
2736 3' -53.3 NC_001491.2 + 148938 0.67 0.917083
Target:  5'- cGGGGCUCgGGCcGGGGUGCucAACCACCa -3'
miRNA:   3'- -UUUCGGG-UCGuUUUCGCG--UUGGUGGa -5'
2736 3' -53.3 NC_001491.2 + 65758 0.67 0.917083
Target:  5'- --cGCCCAgGCGAGcgcagagccgGGCGCccguCCACCa -3'
miRNA:   3'- uuuCGGGU-CGUUU----------UCGCGuu--GGUGGa -5'
2736 3' -53.3 NC_001491.2 + 96334 0.67 0.917083
Target:  5'- gGAGGCgCAgGCA--GGCGCccagGACCGCCa -3'
miRNA:   3'- -UUUCGgGU-CGUuuUCGCG----UUGGUGGa -5'
2736 3' -53.3 NC_001491.2 + 83739 0.67 0.922976
Target:  5'- --uGCCCAGUGccuGGCGCAGguuuUCGCCa -3'
miRNA:   3'- uuuCGGGUCGUuu-UCGCGUU----GGUGGa -5'
2736 3' -53.3 NC_001491.2 + 78523 0.67 0.922976
Target:  5'- -cAGCUCAGCc-AGGCGgGcuACCACCa -3'
miRNA:   3'- uuUCGGGUCGuuUUCGCgU--UGGUGGa -5'
2736 3' -53.3 NC_001491.2 + 115743 0.67 0.897845
Target:  5'- -cAGCCCuccGGCccccAAGCGCAgggugGCCACCc -3'
miRNA:   3'- uuUCGGG---UCGuu--UUCGCGU-----UGGUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.