miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2736 3' -53.3 NC_001491.2 + 99038 0.79 0.297142
Target:  5'- --cGCUCGGCAAAAGCGCcGGCUACCa -3'
miRNA:   3'- uuuCGGGUCGUUUUCGCG-UUGGUGGa -5'
2736 3' -53.3 NC_001491.2 + 69311 0.78 0.342987
Target:  5'- -cAGCCCAGCcgucAGCgGCAGCCGCCg -3'
miRNA:   3'- uuUCGGGUCGuuu-UCG-CGUUGGUGGa -5'
2736 3' -53.3 NC_001491.2 + 141754 0.78 0.359362
Target:  5'- -uGGCCCAGCGGGGGaCGCcguCCACCa -3'
miRNA:   3'- uuUCGGGUCGUUUUC-GCGuu-GGUGGa -5'
2736 3' -53.3 NC_001491.2 + 4927 0.77 0.384931
Target:  5'- gGAAGCCCuacccucGCAGAGcuGUGCGACCACCa -3'
miRNA:   3'- -UUUCGGGu------CGUUUU--CGCGUUGGUGGa -5'
2736 3' -53.3 NC_001491.2 + 123116 0.74 0.538317
Target:  5'- -cGGCCCGGCGccgcuccGGAGCGCGuCCGCUg -3'
miRNA:   3'- uuUCGGGUCGU-------UUUCGCGUuGGUGGa -5'
2736 3' -53.3 NC_001491.2 + 1543 0.73 0.613551
Target:  5'- -cAGCCCAGCGAu-GCGCGgcGCCcCCa -3'
miRNA:   3'- uuUCGGGUCGUUuuCGCGU--UGGuGGa -5'
2736 3' -53.3 NC_001491.2 + 53222 0.73 0.624276
Target:  5'- gGAAGCCCGGCGucgGGAGgGCcgugGGCUACCa -3'
miRNA:   3'- -UUUCGGGUCGU---UUUCgCG----UUGGUGGa -5'
2736 3' -53.3 NC_001491.2 + 115607 0.73 0.635008
Target:  5'- -cGGCCCAGCGAcgcggcuuGCGCGGCCuACUg -3'
miRNA:   3'- uuUCGGGUCGUUuu------CGCGUUGG-UGGa -5'
2736 3' -53.3 NC_001491.2 + 87467 0.72 0.654313
Target:  5'- --cGCCCAGCAuagacacgauucGGGgGUAGCCACCg -3'
miRNA:   3'- uuuCGGGUCGUu-----------UUCgCGUUGGUGGa -5'
2736 3' -53.3 NC_001491.2 + 135347 0.71 0.719962
Target:  5'- --uGCCCAGC-AGAGUGCuauGgCACCUa -3'
miRNA:   3'- uuuCGGGUCGuUUUCGCGu--UgGUGGA- -5'
2736 3' -53.3 NC_001491.2 + 139020 0.71 0.730318
Target:  5'- gGAGGCCgAGCGGGGGagaGCGguaggggaaacGCCGCCUg -3'
miRNA:   3'- -UUUCGGgUCGUUUUCg--CGU-----------UGGUGGA- -5'
2736 3' -53.3 NC_001491.2 + 59088 0.71 0.730318
Target:  5'- --uGUCCAGCAGGGGCaGCugccauggccaGGCCACCg -3'
miRNA:   3'- uuuCGGGUCGUUUUCG-CG-----------UUGGUGGa -5'
2736 3' -53.3 NC_001491.2 + 81407 0.71 0.74058
Target:  5'- cGGGCCCGGCGcuccuuccucuGGGGuUGCAugGCCGCCUa -3'
miRNA:   3'- uUUCGGGUCGU-----------UUUC-GCGU--UGGUGGA- -5'
2736 3' -53.3 NC_001491.2 + 54656 0.71 0.750739
Target:  5'- -cAGCUCGGCuuuGAGCGCGGCC-CUg -3'
miRNA:   3'- uuUCGGGUCGuu-UUCGCGUUGGuGGa -5'
2736 3' -53.3 NC_001491.2 + 6366 0.7 0.764765
Target:  5'- aAAAGCCCccaaagacuGGCucGAGCGCAaaccccccgacucccGCCACCc -3'
miRNA:   3'- -UUUCGGG---------UCGuuUUCGCGU---------------UGGUGGa -5'
2736 3' -53.3 NC_001491.2 + 5567 0.7 0.769714
Target:  5'- cGAGCUCAGCAGAuucuggacauggcGGCGCAggACCGUCUg -3'
miRNA:   3'- uUUCGGGUCGUUU-------------UCGCGU--UGGUGGA- -5'
2736 3' -53.3 NC_001491.2 + 65465 0.7 0.7707
Target:  5'- gGAAGCCCcgGGCAgugccAAGGuCGUAGCCGCUUc -3'
miRNA:   3'- -UUUCGGG--UCGU-----UUUC-GCGUUGGUGGA- -5'
2736 3' -53.3 NC_001491.2 + 138943 0.7 0.799598
Target:  5'- gAGGGCgCCAGCGuacaggGGAGUGUAcCCACCa -3'
miRNA:   3'- -UUUCG-GGUCGU------UUUCGCGUuGGUGGa -5'
2736 3' -53.3 NC_001491.2 + 114099 0.7 0.799598
Target:  5'- --cGCCCAGCAcAA-CGCAGacuCCGCCUa -3'
miRNA:   3'- uuuCGGGUCGUuUUcGCGUU---GGUGGA- -5'
2736 3' -53.3 NC_001491.2 + 146216 0.69 0.808911
Target:  5'- cAGGGCCCAG----AGCGCGuucccgGCCGCCa -3'
miRNA:   3'- -UUUCGGGUCguuuUCGCGU------UGGUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.