miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2736 3' -53.3 NC_001491.2 + 146216 0.69 0.808911
Target:  5'- cAGGGCCCAG----AGCGCGuucccgGCCGCCa -3'
miRNA:   3'- -UUUCGGGUCguuuUCGCGU------UGGUGGa -5'
2736 3' -53.3 NC_001491.2 + 140075 0.69 0.818048
Target:  5'- gGAGGCCUGGCc---GCGCGugUACCg -3'
miRNA:   3'- -UUUCGGGUCGuuuuCGCGUugGUGGa -5'
2736 3' -53.3 NC_001491.2 + 123437 0.69 0.818048
Target:  5'- -cGGCCCAGU---AGCGCucugcguCCGCCg -3'
miRNA:   3'- uuUCGGGUCGuuuUCGCGuu-----GGUGGa -5'
2736 3' -53.3 NC_001491.2 + 147886 0.69 0.826999
Target:  5'- --cGCCCAGCAGguccucguccugGAGCGgGgaguagaggaccACCACCUu -3'
miRNA:   3'- uuuCGGGUCGUU------------UUCGCgU------------UGGUGGA- -5'
2736 3' -53.3 NC_001491.2 + 147307 0.69 0.843462
Target:  5'- aGGAGCCgGGCAucgccuccuggcuGAGGUgggccggggagGCGGCCGCCUg -3'
miRNA:   3'- -UUUCGGgUCGU-------------UUUCG-----------CGUUGGUGGA- -5'
2736 3' -53.3 NC_001491.2 + 117867 0.69 0.852648
Target:  5'- --cGCCCGGCcgcuGGgGCcGCCACCc -3'
miRNA:   3'- uuuCGGGUCGuuu-UCgCGuUGGUGGa -5'
2736 3' -53.3 NC_001491.2 + 116989 0.69 0.852648
Target:  5'- uGGGCCCuGCcaca-CGCGGCCGCCUc -3'
miRNA:   3'- uUUCGGGuCGuuuucGCGUUGGUGGA- -5'
2736 3' -53.3 NC_001491.2 + 29143 0.68 0.868663
Target:  5'- -uGGUCCAcGCAuauAAGCGCGGCCucaaaACCg -3'
miRNA:   3'- uuUCGGGU-CGUu--UUCGCGUUGG-----UGGa -5'
2736 3' -53.3 NC_001491.2 + 116048 0.68 0.868663
Target:  5'- cAGAGC--GGCGGAGGCGCcggggcuacGACCGCCa -3'
miRNA:   3'- -UUUCGggUCGUUUUCGCG---------UUGGUGGa -5'
2736 3' -53.3 NC_001491.2 + 5758 0.68 0.883744
Target:  5'- cGAGCggCCGGCGuuuggccauGGGCGCAgaaACCGCCg -3'
miRNA:   3'- uUUCG--GGUCGUu--------UUCGCGU---UGGUGGa -5'
2736 3' -53.3 NC_001491.2 + 115970 0.68 0.890213
Target:  5'- -cAGCaCCAGCcgcaGAAGGCccgcuccccucagGCGGCCGCCUc -3'
miRNA:   3'- uuUCG-GGUCG----UUUUCG-------------CGUUGGUGGA- -5'
2736 3' -53.3 NC_001491.2 + 144888 0.68 0.890919
Target:  5'- cGGGGaCgCCGGCu-GGGCgGCAGCCGCCg -3'
miRNA:   3'- -UUUC-G-GGUCGuuUUCG-CGUUGGUGGa -5'
2736 3' -53.3 NC_001491.2 + 147197 0.68 0.89372
Target:  5'- -uGGCCCGGCAgcagguggcggucguAGccccGGCGCcuCCGCCg -3'
miRNA:   3'- uuUCGGGUCGU---------------UU----UCGCGuuGGUGGa -5'
2736 3' -53.3 NC_001491.2 + 115743 0.67 0.897845
Target:  5'- -cAGCCCuccGGCccccAAGCGCAgggugGCCACCc -3'
miRNA:   3'- uuUCGGG---UCGuu--UUCGCGU-----UGGUGGa -5'
2736 3' -53.3 NC_001491.2 + 147513 0.67 0.897845
Target:  5'- cAGGGCCCGGgGAGccugguggcccGGgGUGGCCACCc -3'
miRNA:   3'- -UUUCGGGUCgUUU-----------UCgCGUUGGUGGa -5'
2736 3' -53.3 NC_001491.2 + 68732 0.67 0.897845
Target:  5'- --cGUgCAGCgGAGAGCGCcgacGCCGCCa -3'
miRNA:   3'- uuuCGgGUCG-UUUUCGCGu---UGGUGGa -5'
2736 3' -53.3 NC_001491.2 + 139736 0.67 0.899873
Target:  5'- cGAGCCCgAGCuguucccccgccaCGCAGCCGCCg -3'
miRNA:   3'- uUUCGGG-UCGuuuuc--------GCGUUGGUGGa -5'
2736 3' -53.3 NC_001491.2 + 145788 0.67 0.904516
Target:  5'- --cGCCCGG----GGCGCAcgaaGCCGCCg -3'
miRNA:   3'- uuuCGGGUCguuuUCGCGU----UGGUGGa -5'
2736 3' -53.3 NC_001491.2 + 114639 0.67 0.904516
Target:  5'- gAGGGCgCCGcGCAGAGccaccGCGCGGCCaACCg -3'
miRNA:   3'- -UUUCG-GGU-CGUUUU-----CGCGUUGG-UGGa -5'
2736 3' -53.3 NC_001491.2 + 100925 0.67 0.91093
Target:  5'- -cAGCCCGGUgcGAGCuCAGCgGCCc -3'
miRNA:   3'- uuUCGGGUCGuuUUCGcGUUGgUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.