Results 21 - 40 of 76 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
2736 | 3' | -53.3 | NC_001491.2 | + | 137746 | 0.66 | 0.933971 |
Target: 5'- --cGCCCGGCG--GGCGgCGGgCGCCc -3' miRNA: 3'- uuuCGGGUCGUuuUCGC-GUUgGUGGa -5' |
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2736 | 3' | -53.3 | NC_001491.2 | + | 11493 | 0.66 | 0.933971 |
Target: 5'- uAAGGgUCAGCGcguuGCGCAGCUACUg -3' miRNA: 3'- -UUUCgGGUCGUuuu-CGCGUUGGUGGa -5' |
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2736 | 3' | -53.3 | NC_001491.2 | + | 106061 | 0.66 | 0.933971 |
Target: 5'- -cAGaCCCAGCGc-GGCgGCAGCCGCg- -3' miRNA: 3'- uuUC-GGGUCGUuuUCG-CGUUGGUGga -5' |
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2736 | 3' | -53.3 | NC_001491.2 | + | 137679 | 0.66 | 0.928605 |
Target: 5'- cGAGCgggcGCGGGAGCGCGcgagcGCCGCCUc -3' miRNA: 3'- uUUCGggu-CGUUUUCGCGU-----UGGUGGA- -5' |
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2736 | 3' | -53.3 | NC_001491.2 | + | 23267 | 0.66 | 0.928605 |
Target: 5'- cAAGCgC-GCAAcGGGCGCGcGCCGCCUg -3' miRNA: 3'- uUUCGgGuCGUU-UUCGCGU-UGGUGGA- -5' |
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2736 | 3' | -53.3 | NC_001491.2 | + | 19341 | 0.66 | 0.928605 |
Target: 5'- --cGCCCAGCu-GAGgGUGGCCAUg- -3' miRNA: 3'- uuuCGGGUCGuuUUCgCGUUGGUGga -5' |
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2736 | 3' | -53.3 | NC_001491.2 | + | 117134 | 0.66 | 0.926944 |
Target: 5'- uAAGCUCAGCGGGcaagaccagaaccuGGCGCAGuuCUGCCa -3' miRNA: 3'- uUUCGGGUCGUUU--------------UCGCGUU--GGUGGa -5' |
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2736 | 3' | -53.3 | NC_001491.2 | + | 51304 | 0.67 | 0.922976 |
Target: 5'- ---uUCCAGCA--AGCGCu-CCGCCUg -3' miRNA: 3'- uuucGGGUCGUuuUCGCGuuGGUGGA- -5' |
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2736 | 3' | -53.3 | NC_001491.2 | + | 78523 | 0.67 | 0.922976 |
Target: 5'- -cAGCUCAGCc-AGGCGgGcuACCACCa -3' miRNA: 3'- uuUCGGGUCGuuUUCGCgU--UGGUGGa -5' |
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2736 | 3' | -53.3 | NC_001491.2 | + | 83739 | 0.67 | 0.922976 |
Target: 5'- --uGCCCAGUGccuGGCGCAGguuuUCGCCa -3' miRNA: 3'- uuuCGGGUCGUuu-UCGCGUU----GGUGGa -5' |
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2736 | 3' | -53.3 | NC_001491.2 | + | 148938 | 0.67 | 0.917083 |
Target: 5'- cGGGGCUCgGGCcGGGGUGCucAACCACCa -3' miRNA: 3'- -UUUCGGG-UCGuUUUCGCG--UUGGUGGa -5' |
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2736 | 3' | -53.3 | NC_001491.2 | + | 65758 | 0.67 | 0.917083 |
Target: 5'- --cGCCCAgGCGAGcgcagagccgGGCGCccguCCACCa -3' miRNA: 3'- uuuCGGGU-CGUUU----------UCGCGuu--GGUGGa -5' |
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2736 | 3' | -53.3 | NC_001491.2 | + | 96334 | 0.67 | 0.917083 |
Target: 5'- gGAGGCgCAgGCA--GGCGCccagGACCGCCa -3' miRNA: 3'- -UUUCGgGU-CGUuuUCGCG----UUGGUGGa -5' |
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2736 | 3' | -53.3 | NC_001491.2 | + | 146620 | 0.67 | 0.915265 |
Target: 5'- --cGCCCcgccGCGGAGGCGCAggagggccucgaagACgGCCUg -3' miRNA: 3'- uuuCGGGu---CGUUUUCGCGU--------------UGgUGGA- -5' |
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2736 | 3' | -53.3 | NC_001491.2 | + | 115530 | 0.67 | 0.91093 |
Target: 5'- cGAGGCCUGGCGcccGGCGC--UCACCUu -3' miRNA: 3'- -UUUCGGGUCGUuu-UCGCGuuGGUGGA- -5' |
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2736 | 3' | -53.3 | NC_001491.2 | + | 3997 | 0.67 | 0.91093 |
Target: 5'- --cGCCCcGUuu-AGCGCcGCCACCc -3' miRNA: 3'- uuuCGGGuCGuuuUCGCGuUGGUGGa -5' |
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2736 | 3' | -53.3 | NC_001491.2 | + | 100925 | 0.67 | 0.91093 |
Target: 5'- -cAGCCCGGUgcGAGCuCAGCgGCCc -3' miRNA: 3'- uuUCGGGUCGuuUUCGcGUUGgUGGa -5' |
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2736 | 3' | -53.3 | NC_001491.2 | + | 145788 | 0.67 | 0.904516 |
Target: 5'- --cGCCCGG----GGCGCAcgaaGCCGCCg -3' miRNA: 3'- uuuCGGGUCguuuUCGCGU----UGGUGGa -5' |
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2736 | 3' | -53.3 | NC_001491.2 | + | 114639 | 0.67 | 0.904516 |
Target: 5'- gAGGGCgCCGcGCAGAGccaccGCGCGGCCaACCg -3' miRNA: 3'- -UUUCG-GGU-CGUUUU-----CGCGUUGG-UGGa -5' |
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2736 | 3' | -53.3 | NC_001491.2 | + | 139736 | 0.67 | 0.899873 |
Target: 5'- cGAGCCCgAGCuguucccccgccaCGCAGCCGCCg -3' miRNA: 3'- uUUCGGG-UCGuuuuc--------GCGUUGGUGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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