miRNA display CGI


Results 1 - 20 of 76 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2736 3' -53.3 NC_001491.2 + 882 0.66 0.939075
Target:  5'- aGGGGCCCAGCAuagcAGUG-AGCC-CCa -3'
miRNA:   3'- -UUUCGGGUCGUuu--UCGCgUUGGuGGa -5'
2736 3' -53.3 NC_001491.2 + 1543 0.73 0.613551
Target:  5'- -cAGCCCAGCGAu-GCGCGgcGCCcCCa -3'
miRNA:   3'- uuUCGGGUCGUUuuCGCGU--UGGuGGa -5'
2736 3' -53.3 NC_001491.2 + 1640 0.66 0.952833
Target:  5'- cGAGCCUAGCGAAGGCaugGACCuuCg -3'
miRNA:   3'- uUUCGGGUCGUUUUCGcg-UUGGugGa -5'
2736 3' -53.3 NC_001491.2 + 3997 0.67 0.91093
Target:  5'- --cGCCCcGUuu-AGCGCcGCCACCc -3'
miRNA:   3'- uuuCGGGuCGuuuUCGCGuUGGUGGa -5'
2736 3' -53.3 NC_001491.2 + 4927 0.77 0.384931
Target:  5'- gGAAGCCCuacccucGCAGAGcuGUGCGACCACCa -3'
miRNA:   3'- -UUUCGGGu------CGUUUU--CGCGUUGGUGGa -5'
2736 3' -53.3 NC_001491.2 + 5567 0.7 0.769714
Target:  5'- cGAGCUCAGCAGAuucuggacauggcGGCGCAggACCGUCUg -3'
miRNA:   3'- uUUCGGGUCGUUU-------------UCGCGU--UGGUGGA- -5'
2736 3' -53.3 NC_001491.2 + 5758 0.68 0.883744
Target:  5'- cGAGCggCCGGCGuuuggccauGGGCGCAgaaACCGCCg -3'
miRNA:   3'- uUUCG--GGUCGUu--------UUCGCGU---UGGUGGa -5'
2736 3' -53.3 NC_001491.2 + 6366 0.7 0.764765
Target:  5'- aAAAGCCCccaaagacuGGCucGAGCGCAaaccccccgacucccGCCACCc -3'
miRNA:   3'- -UUUCGGG---------UCGuuUUCGCGU---------------UGGUGGa -5'
2736 3' -53.3 NC_001491.2 + 11493 0.66 0.933971
Target:  5'- uAAGGgUCAGCGcguuGCGCAGCUACUg -3'
miRNA:   3'- -UUUCgGGUCGUuuu-CGCGUUGGUGGa -5'
2736 3' -53.3 NC_001491.2 + 19341 0.66 0.928605
Target:  5'- --cGCCCAGCu-GAGgGUGGCCAUg- -3'
miRNA:   3'- uuuCGGGUCGuuUUCgCGUUGGUGga -5'
2736 3' -53.3 NC_001491.2 + 20074 0.66 0.943919
Target:  5'- --cGCCCGGCAcggcuGGGGCGCAugUAg-- -3'
miRNA:   3'- uuuCGGGUCGU-----UUUCGCGUugGUgga -5'
2736 3' -53.3 NC_001491.2 + 23267 0.66 0.928605
Target:  5'- cAAGCgC-GCAAcGGGCGCGcGCCGCCUg -3'
miRNA:   3'- uUUCGgGuCGUU-UUCGCGU-UGGUGGA- -5'
2736 3' -53.3 NC_001491.2 + 23376 0.66 0.948504
Target:  5'- -cGGCCCAcgcugucuGCAu-GGUGCuuGCCGCCUu -3'
miRNA:   3'- uuUCGGGU--------CGUuuUCGCGu-UGGUGGA- -5'
2736 3' -53.3 NC_001491.2 + 29143 0.68 0.868663
Target:  5'- -uGGUCCAcGCAuauAAGCGCGGCCucaaaACCg -3'
miRNA:   3'- uuUCGGGU-CGUu--UUCGCGUUGG-----UGGa -5'
2736 3' -53.3 NC_001491.2 + 33704 0.66 0.952833
Target:  5'- --cGUCCAGUuuuGGUGUAugCGCCa -3'
miRNA:   3'- uuuCGGGUCGuuuUCGCGUugGUGGa -5'
2736 3' -53.3 NC_001491.2 + 41431 0.66 0.939075
Target:  5'- --uGCCCAGCAAcAGC---GCCGCUUg -3'
miRNA:   3'- uuuCGGGUCGUUuUCGcguUGGUGGA- -5'
2736 3' -53.3 NC_001491.2 + 50017 0.66 0.952833
Target:  5'- gGAGGCCCAauacuccuccacGCAGGcccuGCGCGACUgacucGCCa -3'
miRNA:   3'- -UUUCGGGU------------CGUUUu---CGCGUUGG-----UGGa -5'
2736 3' -53.3 NC_001491.2 + 51304 0.67 0.922976
Target:  5'- ---uUCCAGCA--AGCGCu-CCGCCUg -3'
miRNA:   3'- uuucGGGUCGUuuUCGCGuuGGUGGA- -5'
2736 3' -53.3 NC_001491.2 + 52934 0.66 0.939075
Target:  5'- -uGGCCaugcgaaaggCGGUGAGGGCGCGAauccCCACCa -3'
miRNA:   3'- uuUCGG----------GUCGUUUUCGCGUU----GGUGGa -5'
2736 3' -53.3 NC_001491.2 + 53222 0.73 0.624276
Target:  5'- gGAAGCCCGGCGucgGGAGgGCcgugGGCUACCa -3'
miRNA:   3'- -UUUCGGGUCGU---UUUCgCG----UUGGUGGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.