miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2736 3' -53.3 NC_001491.2 + 54656 0.71 0.750739
Target:  5'- -cAGCUCGGCuuuGAGCGCGGCC-CUg -3'
miRNA:   3'- uuUCGGGUCGuu-UUCGCGUUGGuGGa -5'
2736 3' -53.3 NC_001491.2 + 59088 0.71 0.730318
Target:  5'- --uGUCCAGCAGGGGCaGCugccauggccaGGCCACCg -3'
miRNA:   3'- uuuCGGGUCGUUUUCG-CG-----------UUGGUGGa -5'
2736 3' -53.3 NC_001491.2 + 65465 0.7 0.7707
Target:  5'- gGAAGCCCcgGGCAgugccAAGGuCGUAGCCGCUUc -3'
miRNA:   3'- -UUUCGGG--UCGU-----UUUC-GCGUUGGUGGA- -5'
2736 3' -53.3 NC_001491.2 + 65758 0.67 0.917083
Target:  5'- --cGCCCAgGCGAGcgcagagccgGGCGCccguCCACCa -3'
miRNA:   3'- uuuCGGGU-CGUUU----------UCGCGuu--GGUGGa -5'
2736 3' -53.3 NC_001491.2 + 67460 0.66 0.943919
Target:  5'- -uAGCCCuccAGUAcGAGCGCGGCCugggGCUg -3'
miRNA:   3'- uuUCGGG---UCGUuUUCGCGUUGG----UGGa -5'
2736 3' -53.3 NC_001491.2 + 68732 0.67 0.897845
Target:  5'- --cGUgCAGCgGAGAGCGCcgacGCCGCCa -3'
miRNA:   3'- uuuCGgGUCG-UUUUCGCGu---UGGUGGa -5'
2736 3' -53.3 NC_001491.2 + 69311 0.78 0.342987
Target:  5'- -cAGCCCAGCcgucAGCgGCAGCCGCCg -3'
miRNA:   3'- uuUCGGGUCGuuu-UCG-CGUUGGUGGa -5'
2736 3' -53.3 NC_001491.2 + 78523 0.67 0.922976
Target:  5'- -cAGCUCAGCc-AGGCGgGcuACCACCa -3'
miRNA:   3'- uuUCGGGUCGuuUUCGCgU--UGGUGGa -5'
2736 3' -53.3 NC_001491.2 + 81407 0.71 0.74058
Target:  5'- cGGGCCCGGCGcuccuuccucuGGGGuUGCAugGCCGCCUa -3'
miRNA:   3'- uUUCGGGUCGU-----------UUUC-GCGU--UGGUGGA- -5'
2736 3' -53.3 NC_001491.2 + 83739 0.67 0.922976
Target:  5'- --uGCCCAGUGccuGGCGCAGguuuUCGCCa -3'
miRNA:   3'- uuuCGGGUCGUuu-UCGCGUU----GGUGGa -5'
2736 3' -53.3 NC_001491.2 + 87467 0.72 0.654313
Target:  5'- --cGCCCAGCAuagacacgauucGGGgGUAGCCACCg -3'
miRNA:   3'- uuuCGGGUCGUu-----------UUCgCGUUGGUGGa -5'
2736 3' -53.3 NC_001491.2 + 96334 0.67 0.917083
Target:  5'- gGAGGCgCAgGCA--GGCGCccagGACCGCCa -3'
miRNA:   3'- -UUUCGgGU-CGUuuUCGCG----UUGGUGGa -5'
2736 3' -53.3 NC_001491.2 + 99038 0.79 0.297142
Target:  5'- --cGCUCGGCAAAAGCGCcGGCUACCa -3'
miRNA:   3'- uuuCGGGUCGUUUUCGCG-UUGGUGGa -5'
2736 3' -53.3 NC_001491.2 + 100925 0.67 0.91093
Target:  5'- -cAGCCCGGUgcGAGCuCAGCgGCCc -3'
miRNA:   3'- uuUCGGGUCGuuUUCGcGUUGgUGGa -5'
2736 3' -53.3 NC_001491.2 + 106061 0.66 0.933971
Target:  5'- -cAGaCCCAGCGc-GGCgGCAGCCGCg- -3'
miRNA:   3'- uuUC-GGGUCGUuuUCG-CGUUGGUGga -5'
2736 3' -53.3 NC_001491.2 + 109026 0.69 0.808911
Target:  5'- -uAGCCCuAGCGuuAGCGCuAgCGCCa -3'
miRNA:   3'- uuUCGGG-UCGUuuUCGCGuUgGUGGa -5'
2736 3' -53.3 NC_001491.2 + 109062 0.66 0.933971
Target:  5'- -uAGCCCuAGCGuuAGCGCuAGCC-CUa -3'
miRNA:   3'- uuUCGGG-UCGUuuUCGCG-UUGGuGGa -5'
2736 3' -53.3 NC_001491.2 + 110866 0.66 0.943919
Target:  5'- -cGGCCCAuGCGGccuAGaUGCAGCCugCg -3'
miRNA:   3'- uuUCGGGU-CGUUu--UC-GCGUUGGugGa -5'
2736 3' -53.3 NC_001491.2 + 114099 0.7 0.799598
Target:  5'- --cGCCCAGCAcAA-CGCAGacuCCGCCUa -3'
miRNA:   3'- uuuCGGGUCGUuUUcGCGUU---GGUGGA- -5'
2736 3' -53.3 NC_001491.2 + 114639 0.67 0.904516
Target:  5'- gAGGGCgCCGcGCAGAGccaccGCGCGGCCaACCg -3'
miRNA:   3'- -UUUCG-GGU-CGUUUU-----CGCGUUGG-UGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.