miRNA display CGI


Results 41 - 60 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2736 3' -53.3 NC_001491.2 + 115530 0.67 0.91093
Target:  5'- cGAGGCCUGGCGcccGGCGC--UCACCUu -3'
miRNA:   3'- -UUUCGGGUCGUuu-UCGCGuuGGUGGA- -5'
2736 3' -53.3 NC_001491.2 + 115607 0.73 0.635008
Target:  5'- -cGGCCCAGCGAcgcggcuuGCGCGGCCuACUg -3'
miRNA:   3'- uuUCGGGUCGUUuu------CGCGUUGG-UGGa -5'
2736 3' -53.3 NC_001491.2 + 115743 0.67 0.897845
Target:  5'- -cAGCCCuccGGCccccAAGCGCAgggugGCCACCc -3'
miRNA:   3'- uuUCGGG---UCGuu--UUCGCGU-----UGGUGGa -5'
2736 3' -53.3 NC_001491.2 + 115970 0.68 0.890213
Target:  5'- -cAGCaCCAGCcgcaGAAGGCccgcuccccucagGCGGCCGCCUc -3'
miRNA:   3'- uuUCG-GGUCG----UUUUCG-------------CGUUGGUGGA- -5'
2736 3' -53.3 NC_001491.2 + 116048 0.68 0.868663
Target:  5'- cAGAGC--GGCGGAGGCGCcggggcuacGACCGCCa -3'
miRNA:   3'- -UUUCGggUCGUUUUCGCG---------UUGGUGGa -5'
2736 3' -53.3 NC_001491.2 + 116185 0.66 0.951561
Target:  5'- --cGCCCGGCGGcGAGCccuucuccggcuccGCGGCCGCg- -3'
miRNA:   3'- uuuCGGGUCGUU-UUCG--------------CGUUGGUGga -5'
2736 3' -53.3 NC_001491.2 + 116989 0.69 0.852648
Target:  5'- uGGGCCCuGCcaca-CGCGGCCGCCUc -3'
miRNA:   3'- uUUCGGGuCGuuuucGCGUUGGUGGA- -5'
2736 3' -53.3 NC_001491.2 + 117134 0.66 0.926944
Target:  5'- uAAGCUCAGCGGGcaagaccagaaccuGGCGCAGuuCUGCCa -3'
miRNA:   3'- uUUCGGGUCGUUU--------------UCGCGUU--GGUGGa -5'
2736 3' -53.3 NC_001491.2 + 117797 0.66 0.939075
Target:  5'- -cGGCuCCAGCuucGGCGCccgcucccAGCCGCCc -3'
miRNA:   3'- uuUCG-GGUCGuuuUCGCG--------UUGGUGGa -5'
2736 3' -53.3 NC_001491.2 + 117867 0.69 0.852648
Target:  5'- --cGCCCGGCcgcuGGgGCcGCCACCc -3'
miRNA:   3'- uuuCGGGUCGuuu-UCgCGuUGGUGGa -5'
2736 3' -53.3 NC_001491.2 + 118401 0.66 0.943446
Target:  5'- cGAGCCCcGCGGAgggaaGGCGaagcggucgcccuCGGCCGCCg -3'
miRNA:   3'- uUUCGGGuCGUUU-----UCGC-------------GUUGGUGGa -5'
2736 3' -53.3 NC_001491.2 + 118909 0.66 0.943919
Target:  5'- --uGCCuCGGCGGAgcucGGCGCGGaaGCCUg -3'
miRNA:   3'- uuuCGG-GUCGUUU----UCGCGUUggUGGA- -5'
2736 3' -53.3 NC_001491.2 + 123042 0.66 0.943919
Target:  5'- cGGAGCgcggCAGCGAGAcCGCGugCGCCg -3'
miRNA:   3'- -UUUCGg---GUCGUUUUcGCGUugGUGGa -5'
2736 3' -53.3 NC_001491.2 + 123116 0.74 0.538317
Target:  5'- -cGGCCCGGCGccgcuccGGAGCGCGuCCGCUg -3'
miRNA:   3'- uuUCGGGUCGU-------UUUCGCGUuGGUGGa -5'
2736 3' -53.3 NC_001491.2 + 123437 0.69 0.818048
Target:  5'- -cGGCCCAGU---AGCGCucugcguCCGCCg -3'
miRNA:   3'- uuUCGGGUCGuuuUCGCGuu-----GGUGGa -5'
2736 3' -53.3 NC_001491.2 + 135347 0.71 0.719962
Target:  5'- --uGCCCAGC-AGAGUGCuauGgCACCUa -3'
miRNA:   3'- uuuCGGGUCGuUUUCGCGu--UgGUGGA- -5'
2736 3' -53.3 NC_001491.2 + 137679 0.66 0.928605
Target:  5'- cGAGCgggcGCGGGAGCGCGcgagcGCCGCCUc -3'
miRNA:   3'- uUUCGggu-CGUUUUCGCGU-----UGGUGGA- -5'
2736 3' -53.3 NC_001491.2 + 137746 0.66 0.933971
Target:  5'- --cGCCCGGCG--GGCGgCGGgCGCCc -3'
miRNA:   3'- uuuCGGGUCGUuuUCGC-GUUgGUGGa -5'
2736 3' -53.3 NC_001491.2 + 138943 0.7 0.799598
Target:  5'- gAGGGCgCCAGCGuacaggGGAGUGUAcCCACCa -3'
miRNA:   3'- -UUUCG-GGUCGU------UUUCGCGUuGGUGGa -5'
2736 3' -53.3 NC_001491.2 + 139020 0.71 0.730318
Target:  5'- gGAGGCCgAGCGGGGGagaGCGguaggggaaacGCCGCCUg -3'
miRNA:   3'- -UUUCGGgUCGUUUUCg--CGU-----------UGGUGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.