miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2736 3' -53.3 NC_001491.2 + 148938 0.67 0.917083
Target:  5'- cGGGGCUCgGGCcGGGGUGCucAACCACCa -3'
miRNA:   3'- -UUUCGGG-UCGuUUUCGCG--UUGGUGGa -5'
2736 3' -53.3 NC_001491.2 + 148639 0.66 0.952833
Target:  5'- -cGGCCgcaGGCGAGguacacggGGCGCAGCCagGCCc -3'
miRNA:   3'- uuUCGGg--UCGUUU--------UCGCGUUGG--UGGa -5'
2736 3' -53.3 NC_001491.2 + 147886 0.69 0.826999
Target:  5'- --cGCCCAGCAGguccucguccugGAGCGgGgaguagaggaccACCACCUu -3'
miRNA:   3'- uuuCGGGUCGUU------------UUCGCgU------------UGGUGGA- -5'
2736 3' -53.3 NC_001491.2 + 147513 0.67 0.897845
Target:  5'- cAGGGCCCGGgGAGccugguggcccGGgGUGGCCACCc -3'
miRNA:   3'- -UUUCGGGUCgUUU-----------UCgCGUUGGUGGa -5'
2736 3' -53.3 NC_001491.2 + 147307 0.69 0.843462
Target:  5'- aGGAGCCgGGCAucgccuccuggcuGAGGUgggccggggagGCGGCCGCCUg -3'
miRNA:   3'- -UUUCGGgUCGU-------------UUUCG-----------CGUUGGUGGA- -5'
2736 3' -53.3 NC_001491.2 + 147197 0.68 0.89372
Target:  5'- -uGGCCCGGCAgcagguggcggucguAGccccGGCGCcuCCGCCg -3'
miRNA:   3'- uuUCGGGUCGU---------------UU----UCGCGuuGGUGGa -5'
2736 3' -53.3 NC_001491.2 + 146620 0.67 0.915265
Target:  5'- --cGCCCcgccGCGGAGGCGCAggagggccucgaagACgGCCUg -3'
miRNA:   3'- uuuCGGGu---CGUUUUCGCGU--------------UGgUGGA- -5'
2736 3' -53.3 NC_001491.2 + 146216 0.69 0.808911
Target:  5'- cAGGGCCCAG----AGCGCGuucccgGCCGCCa -3'
miRNA:   3'- -UUUCGGGUCguuuUCGCGU------UGGUGGa -5'
2736 3' -53.3 NC_001491.2 + 145788 0.67 0.904516
Target:  5'- --cGCCCGG----GGCGCAcgaaGCCGCCg -3'
miRNA:   3'- uuuCGGGUCguuuUCGCGU----UGGUGGa -5'
2736 3' -53.3 NC_001491.2 + 144888 0.68 0.890919
Target:  5'- cGGGGaCgCCGGCu-GGGCgGCAGCCGCCg -3'
miRNA:   3'- -UUUC-G-GGUCGuuUUCG-CGUUGGUGGa -5'
2736 3' -53.3 NC_001491.2 + 144844 0.66 0.952833
Target:  5'- --cGCugCCGGCGGccGAGgGCGACCGCUUc -3'
miRNA:   3'- uuuCG--GGUCGUU--UUCgCGUUGGUGGA- -5'
2736 3' -53.3 NC_001491.2 + 141860 0.66 0.939075
Target:  5'- -cGGCCCAGCcc-AGCuccgGCGACC-CCg -3'
miRNA:   3'- uuUCGGGUCGuuuUCG----CGUUGGuGGa -5'
2736 3' -53.3 NC_001491.2 + 141835 0.66 0.939075
Target:  5'- -cGGCCCAGCcc-AGCuccgGCGACC-CCg -3'
miRNA:   3'- uuUCGGGUCGuuuUCG----CGUUGGuGGa -5'
2736 3' -53.3 NC_001491.2 + 141754 0.78 0.359362
Target:  5'- -uGGCCCAGCGGGGGaCGCcguCCACCa -3'
miRNA:   3'- uuUCGGGUCGUUUUC-GCGuu-GGUGGa -5'
2736 3' -53.3 NC_001491.2 + 140075 0.69 0.818048
Target:  5'- gGAGGCCUGGCc---GCGCGugUACCg -3'
miRNA:   3'- -UUUCGGGUCGuuuuCGCGUugGUGGa -5'
2736 3' -53.3 NC_001491.2 + 139736 0.67 0.899873
Target:  5'- cGAGCCCgAGCuguucccccgccaCGCAGCCGCCg -3'
miRNA:   3'- uUUCGGG-UCGuuuuc--------GCGUUGGUGGa -5'
2736 3' -53.3 NC_001491.2 + 139020 0.71 0.730318
Target:  5'- gGAGGCCgAGCGGGGGagaGCGguaggggaaacGCCGCCUg -3'
miRNA:   3'- -UUUCGGgUCGUUUUCg--CGU-----------UGGUGGA- -5'
2736 3' -53.3 NC_001491.2 + 138943 0.7 0.799598
Target:  5'- gAGGGCgCCAGCGuacaggGGAGUGUAcCCACCa -3'
miRNA:   3'- -UUUCG-GGUCGU------UUUCGCGUuGGUGGa -5'
2736 3' -53.3 NC_001491.2 + 137746 0.66 0.933971
Target:  5'- --cGCCCGGCG--GGCGgCGGgCGCCc -3'
miRNA:   3'- uuuCGGGUCGUuuUCGC-GUUgGUGGa -5'
2736 3' -53.3 NC_001491.2 + 137679 0.66 0.928605
Target:  5'- cGAGCgggcGCGGGAGCGCGcgagcGCCGCCUc -3'
miRNA:   3'- uUUCGggu-CGUUUUCGCGU-----UGGUGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.