Results 21 - 40 of 76 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2736 | 3' | -53.3 | NC_001491.2 | + | 135347 | 0.71 | 0.719962 |
Target: 5'- --uGCCCAGC-AGAGUGCuauGgCACCUa -3' miRNA: 3'- uuuCGGGUCGuUUUCGCGu--UgGUGGA- -5' |
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2736 | 3' | -53.3 | NC_001491.2 | + | 123437 | 0.69 | 0.818048 |
Target: 5'- -cGGCCCAGU---AGCGCucugcguCCGCCg -3' miRNA: 3'- uuUCGGGUCGuuuUCGCGuu-----GGUGGa -5' |
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2736 | 3' | -53.3 | NC_001491.2 | + | 123116 | 0.74 | 0.538317 |
Target: 5'- -cGGCCCGGCGccgcuccGGAGCGCGuCCGCUg -3' miRNA: 3'- uuUCGGGUCGU-------UUUCGCGUuGGUGGa -5' |
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2736 | 3' | -53.3 | NC_001491.2 | + | 123042 | 0.66 | 0.943919 |
Target: 5'- cGGAGCgcggCAGCGAGAcCGCGugCGCCg -3' miRNA: 3'- -UUUCGg---GUCGUUUUcGCGUugGUGGa -5' |
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2736 | 3' | -53.3 | NC_001491.2 | + | 118909 | 0.66 | 0.943919 |
Target: 5'- --uGCCuCGGCGGAgcucGGCGCGGaaGCCUg -3' miRNA: 3'- uuuCGG-GUCGUUU----UCGCGUUggUGGA- -5' |
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2736 | 3' | -53.3 | NC_001491.2 | + | 118401 | 0.66 | 0.943446 |
Target: 5'- cGAGCCCcGCGGAgggaaGGCGaagcggucgcccuCGGCCGCCg -3' miRNA: 3'- uUUCGGGuCGUUU-----UCGC-------------GUUGGUGGa -5' |
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2736 | 3' | -53.3 | NC_001491.2 | + | 117867 | 0.69 | 0.852648 |
Target: 5'- --cGCCCGGCcgcuGGgGCcGCCACCc -3' miRNA: 3'- uuuCGGGUCGuuu-UCgCGuUGGUGGa -5' |
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2736 | 3' | -53.3 | NC_001491.2 | + | 117797 | 0.66 | 0.939075 |
Target: 5'- -cGGCuCCAGCuucGGCGCccgcucccAGCCGCCc -3' miRNA: 3'- uuUCG-GGUCGuuuUCGCG--------UUGGUGGa -5' |
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2736 | 3' | -53.3 | NC_001491.2 | + | 117134 | 0.66 | 0.926944 |
Target: 5'- uAAGCUCAGCGGGcaagaccagaaccuGGCGCAGuuCUGCCa -3' miRNA: 3'- uUUCGGGUCGUUU--------------UCGCGUU--GGUGGa -5' |
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2736 | 3' | -53.3 | NC_001491.2 | + | 116989 | 0.69 | 0.852648 |
Target: 5'- uGGGCCCuGCcaca-CGCGGCCGCCUc -3' miRNA: 3'- uUUCGGGuCGuuuucGCGUUGGUGGA- -5' |
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2736 | 3' | -53.3 | NC_001491.2 | + | 116185 | 0.66 | 0.951561 |
Target: 5'- --cGCCCGGCGGcGAGCccuucuccggcuccGCGGCCGCg- -3' miRNA: 3'- uuuCGGGUCGUU-UUCG--------------CGUUGGUGga -5' |
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2736 | 3' | -53.3 | NC_001491.2 | + | 116048 | 0.68 | 0.868663 |
Target: 5'- cAGAGC--GGCGGAGGCGCcggggcuacGACCGCCa -3' miRNA: 3'- -UUUCGggUCGUUUUCGCG---------UUGGUGGa -5' |
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2736 | 3' | -53.3 | NC_001491.2 | + | 115970 | 0.68 | 0.890213 |
Target: 5'- -cAGCaCCAGCcgcaGAAGGCccgcuccccucagGCGGCCGCCUc -3' miRNA: 3'- uuUCG-GGUCG----UUUUCG-------------CGUUGGUGGA- -5' |
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2736 | 3' | -53.3 | NC_001491.2 | + | 115743 | 0.67 | 0.897845 |
Target: 5'- -cAGCCCuccGGCccccAAGCGCAgggugGCCACCc -3' miRNA: 3'- uuUCGGG---UCGuu--UUCGCGU-----UGGUGGa -5' |
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2736 | 3' | -53.3 | NC_001491.2 | + | 115607 | 0.73 | 0.635008 |
Target: 5'- -cGGCCCAGCGAcgcggcuuGCGCGGCCuACUg -3' miRNA: 3'- uuUCGGGUCGUUuu------CGCGUUGG-UGGa -5' |
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2736 | 3' | -53.3 | NC_001491.2 | + | 115530 | 0.67 | 0.91093 |
Target: 5'- cGAGGCCUGGCGcccGGCGC--UCACCUu -3' miRNA: 3'- -UUUCGGGUCGUuu-UCGCGuuGGUGGA- -5' |
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2736 | 3' | -53.3 | NC_001491.2 | + | 114639 | 0.67 | 0.904516 |
Target: 5'- gAGGGCgCCGcGCAGAGccaccGCGCGGCCaACCg -3' miRNA: 3'- -UUUCG-GGU-CGUUUU-----CGCGUUGG-UGGa -5' |
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2736 | 3' | -53.3 | NC_001491.2 | + | 114099 | 0.7 | 0.799598 |
Target: 5'- --cGCCCAGCAcAA-CGCAGacuCCGCCUa -3' miRNA: 3'- uuuCGGGUCGUuUUcGCGUU---GGUGGA- -5' |
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2736 | 3' | -53.3 | NC_001491.2 | + | 110866 | 0.66 | 0.943919 |
Target: 5'- -cGGCCCAuGCGGccuAGaUGCAGCCugCg -3' miRNA: 3'- uuUCGGGU-CGUUu--UC-GCGUUGGugGa -5' |
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2736 | 3' | -53.3 | NC_001491.2 | + | 109062 | 0.66 | 0.933971 |
Target: 5'- -uAGCCCuAGCGuuAGCGCuAGCC-CUa -3' miRNA: 3'- uuUCGGG-UCGUuuUCGCG-UUGGuGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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