Results 41 - 60 of 76 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2736 | 3' | -53.3 | NC_001491.2 | + | 116185 | 0.66 | 0.951561 |
Target: 5'- --cGCCCGGCGGcGAGCccuucuccggcuccGCGGCCGCg- -3' miRNA: 3'- uuuCGGGUCGUU-UUCG--------------CGUUGGUGga -5' |
|||||||
2736 | 3' | -53.3 | NC_001491.2 | + | 148639 | 0.66 | 0.952833 |
Target: 5'- -cGGCCgcaGGCGAGguacacggGGCGCAGCCagGCCc -3' miRNA: 3'- uuUCGGg--UCGUUU--------UCGCGUUGG--UGGa -5' |
|||||||
2736 | 3' | -53.3 | NC_001491.2 | + | 144844 | 0.66 | 0.952833 |
Target: 5'- --cGCugCCGGCGGccGAGgGCGACCGCUUc -3' miRNA: 3'- uuuCG--GGUCGUU--UUCgCGUUGGUGGA- -5' |
|||||||
2736 | 3' | -53.3 | NC_001491.2 | + | 50017 | 0.66 | 0.952833 |
Target: 5'- gGAGGCCCAauacuccuccacGCAGGcccuGCGCGACUgacucGCCa -3' miRNA: 3'- -UUUCGGGU------------CGUUUu---CGCGUUGG-----UGGa -5' |
|||||||
2736 | 3' | -53.3 | NC_001491.2 | + | 33704 | 0.66 | 0.952833 |
Target: 5'- --cGUCCAGUuuuGGUGUAugCGCCa -3' miRNA: 3'- uuuCGGGUCGuuuUCGCGUugGUGGa -5' |
|||||||
2736 | 3' | -53.3 | NC_001491.2 | + | 117797 | 0.66 | 0.939075 |
Target: 5'- -cGGCuCCAGCuucGGCGCccgcucccAGCCGCCc -3' miRNA: 3'- uuUCG-GGUCGuuuUCGCG--------UUGGUGGa -5' |
|||||||
2736 | 3' | -53.3 | NC_001491.2 | + | 41431 | 0.66 | 0.939075 |
Target: 5'- --uGCCCAGCAAcAGC---GCCGCUUg -3' miRNA: 3'- uuuCGGGUCGUUuUCGcguUGGUGGA- -5' |
|||||||
2736 | 3' | -53.3 | NC_001491.2 | + | 78523 | 0.67 | 0.922976 |
Target: 5'- -cAGCUCAGCc-AGGCGgGcuACCACCa -3' miRNA: 3'- uuUCGGGUCGuuUUCGCgU--UGGUGGa -5' |
|||||||
2736 | 3' | -53.3 | NC_001491.2 | + | 51304 | 0.67 | 0.922976 |
Target: 5'- ---uUCCAGCA--AGCGCu-CCGCCUg -3' miRNA: 3'- uuucGGGUCGUuuUCGCGuuGGUGGA- -5' |
|||||||
2736 | 3' | -53.3 | NC_001491.2 | + | 117134 | 0.66 | 0.926944 |
Target: 5'- uAAGCUCAGCGGGcaagaccagaaccuGGCGCAGuuCUGCCa -3' miRNA: 3'- uUUCGGGUCGUUU--------------UCGCGUU--GGUGGa -5' |
|||||||
2736 | 3' | -53.3 | NC_001491.2 | + | 19341 | 0.66 | 0.928605 |
Target: 5'- --cGCCCAGCu-GAGgGUGGCCAUg- -3' miRNA: 3'- uuuCGGGUCGuuUUCgCGUUGGUGga -5' |
|||||||
2736 | 3' | -53.3 | NC_001491.2 | + | 23267 | 0.66 | 0.928605 |
Target: 5'- cAAGCgC-GCAAcGGGCGCGcGCCGCCUg -3' miRNA: 3'- uUUCGgGuCGUU-UUCGCGU-UGGUGGA- -5' |
|||||||
2736 | 3' | -53.3 | NC_001491.2 | + | 137679 | 0.66 | 0.928605 |
Target: 5'- cGAGCgggcGCGGGAGCGCGcgagcGCCGCCUc -3' miRNA: 3'- uUUCGggu-CGUUUUCGCGU-----UGGUGGA- -5' |
|||||||
2736 | 3' | -53.3 | NC_001491.2 | + | 109062 | 0.66 | 0.933971 |
Target: 5'- -uAGCCCuAGCGuuAGCGCuAGCC-CUa -3' miRNA: 3'- uuUCGGG-UCGUuuUCGCG-UUGGuGGa -5' |
|||||||
2736 | 3' | -53.3 | NC_001491.2 | + | 137746 | 0.66 | 0.933971 |
Target: 5'- --cGCCCGGCG--GGCGgCGGgCGCCc -3' miRNA: 3'- uuuCGGGUCGUuuUCGC-GUUgGUGGa -5' |
|||||||
2736 | 3' | -53.3 | NC_001491.2 | + | 11493 | 0.66 | 0.933971 |
Target: 5'- uAAGGgUCAGCGcguuGCGCAGCUACUg -3' miRNA: 3'- -UUUCgGGUCGUuuu-CGCGUUGGUGGa -5' |
|||||||
2736 | 3' | -53.3 | NC_001491.2 | + | 106061 | 0.66 | 0.933971 |
Target: 5'- -cAGaCCCAGCGc-GGCgGCAGCCGCg- -3' miRNA: 3'- uuUC-GGGUCGUuuUCG-CGUUGGUGga -5' |
|||||||
2736 | 3' | -53.3 | NC_001491.2 | + | 52934 | 0.66 | 0.939075 |
Target: 5'- -uGGCCaugcgaaaggCGGUGAGGGCGCGAauccCCACCa -3' miRNA: 3'- uuUCGG----------GUCGUUUUCGCGUU----GGUGGa -5' |
|||||||
2736 | 3' | -53.3 | NC_001491.2 | + | 141860 | 0.66 | 0.939075 |
Target: 5'- -cGGCCCAGCcc-AGCuccgGCGACC-CCg -3' miRNA: 3'- uuUCGGGUCGuuuUCG----CGUUGGuGGa -5' |
|||||||
2736 | 3' | -53.3 | NC_001491.2 | + | 141835 | 0.66 | 0.939075 |
Target: 5'- -cGGCCCAGCcc-AGCuccgGCGACC-CCg -3' miRNA: 3'- uuUCGGGUCGuuuUCG----CGUUGGuGGa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home