miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2736 5' -59.8 NC_001491.2 + 101530 0.66 0.745267
Target:  5'- gGCAGCgUGCUGUUCgACUCaCCGCu--- -3'
miRNA:   3'- -CGUCG-ACGACGAGgUGGG-GGUGcaca -5'
2736 5' -59.8 NC_001491.2 + 146255 0.66 0.745267
Target:  5'- cGUAGCgGCgGCUcauggCCACCaggcggCCGCGUGUg -3'
miRNA:   3'- -CGUCGaCGaCGA-----GGUGGg-----GGUGCACA- -5'
2736 5' -59.8 NC_001491.2 + 147239 0.66 0.735668
Target:  5'- uGCGGCUggGCUGCU--GCCCCCGgGa-- -3'
miRNA:   3'- -CGUCGA--CGACGAggUGGGGGUgCaca -5'
2736 5' -59.8 NC_001491.2 + 141355 0.66 0.725981
Target:  5'- uGCAGCUGCUGC-CCGagcagagcUUCCCGCu--- -3'
miRNA:   3'- -CGUCGACGACGaGGU--------GGGGGUGcaca -5'
2736 5' -59.8 NC_001491.2 + 147362 0.66 0.725981
Target:  5'- cGCcGCuUGCcGCUCUugCCCCugGg-- -3'
miRNA:   3'- -CGuCG-ACGaCGAGGugGGGGugCaca -5'
2736 5' -59.8 NC_001491.2 + 6294 0.66 0.714254
Target:  5'- cCAGUUGCUGCUCCACggugcuggcuaaCCUGUGUGg -3'
miRNA:   3'- cGUCGACGACGAGGUGg-----------GGGUGCACa -5'
2736 5' -59.8 NC_001491.2 + 13084 0.66 0.706381
Target:  5'- aGCAGCaGCUGCUCC-CCUUgGagGUGg -3'
miRNA:   3'- -CGUCGaCGACGAGGuGGGGgUg-CACa -5'
2736 5' -59.8 NC_001491.2 + 138748 0.69 0.546261
Target:  5'- cGCGGCUGCgggGCUgCCugGCCCCuCugGgGUg -3'
miRNA:   3'- -CGUCGACGa--CGA-GG--UGGGG-GugCaCA- -5'
2736 5' -59.8 NC_001491.2 + 148863 0.69 0.526716
Target:  5'- cCGGCagGCacaGCUCCgugGCCCCCAUGUGc -3'
miRNA:   3'- cGUCGa-CGa--CGAGG---UGGGGGUGCACa -5'
2736 5' -59.8 NC_001491.2 + 145754 0.69 0.517042
Target:  5'- uGCuGCUGCUGCcgCCGCCCCgguaGCcUGg -3'
miRNA:   3'- -CGuCGACGACGa-GGUGGGGg---UGcACa -5'
2736 5' -59.8 NC_001491.2 + 81110 0.7 0.457924
Target:  5'- gGCGGCUGCguagGCggcggugaagcCCACCCCCaaguccacguuagcACGUGg -3'
miRNA:   3'- -CGUCGACGa---CGa----------GGUGGGGG--------------UGCACa -5'
2736 5' -59.8 NC_001491.2 + 39163 0.71 0.43371
Target:  5'- aGCAGC-GCUGCcCaCGCCCCCAgagcauuaucCGUGg -3'
miRNA:   3'- -CGUCGaCGACGaG-GUGGGGGU----------GCACa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.