Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2736 | 5' | -59.8 | NC_001491.2 | + | 101530 | 0.66 | 0.745267 |
Target: 5'- gGCAGCgUGCUGUUCgACUCaCCGCu--- -3' miRNA: 3'- -CGUCG-ACGACGAGgUGGG-GGUGcaca -5' |
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2736 | 5' | -59.8 | NC_001491.2 | + | 13084 | 0.66 | 0.706381 |
Target: 5'- aGCAGCaGCUGCUCC-CCUUgGagGUGg -3' miRNA: 3'- -CGUCGaCGACGAGGuGGGGgUg-CACa -5' |
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2736 | 5' | -59.8 | NC_001491.2 | + | 6294 | 0.66 | 0.714254 |
Target: 5'- cCAGUUGCUGCUCCACggugcuggcuaaCCUGUGUGg -3' miRNA: 3'- cGUCGACGACGAGGUGg-----------GGGUGCACa -5' |
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2736 | 5' | -59.8 | NC_001491.2 | + | 147362 | 0.66 | 0.725981 |
Target: 5'- cGCcGCuUGCcGCUCUugCCCCugGg-- -3' miRNA: 3'- -CGuCG-ACGaCGAGGugGGGGugCaca -5' |
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2736 | 5' | -59.8 | NC_001491.2 | + | 141355 | 0.66 | 0.725981 |
Target: 5'- uGCAGCUGCUGC-CCGagcagagcUUCCCGCu--- -3' miRNA: 3'- -CGUCGACGACGaGGU--------GGGGGUGcaca -5' |
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2736 | 5' | -59.8 | NC_001491.2 | + | 147239 | 0.66 | 0.735668 |
Target: 5'- uGCGGCUggGCUGCU--GCCCCCGgGa-- -3' miRNA: 3'- -CGUCGA--CGACGAggUGGGGGUgCaca -5' |
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2736 | 5' | -59.8 | NC_001491.2 | + | 146255 | 0.66 | 0.745267 |
Target: 5'- cGUAGCgGCgGCUcauggCCACCaggcggCCGCGUGUg -3' miRNA: 3'- -CGUCGaCGaCGA-----GGUGGg-----GGUGCACA- -5' |
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2736 | 5' | -59.8 | NC_001491.2 | + | 138748 | 0.69 | 0.546261 |
Target: 5'- cGCGGCUGCgggGCUgCCugGCCCCuCugGgGUg -3' miRNA: 3'- -CGUCGACGa--CGA-GG--UGGGG-GugCaCA- -5' |
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2736 | 5' | -59.8 | NC_001491.2 | + | 148863 | 0.69 | 0.526716 |
Target: 5'- cCGGCagGCacaGCUCCgugGCCCCCAUGUGc -3' miRNA: 3'- cGUCGa-CGa--CGAGG---UGGGGGUGCACa -5' |
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2736 | 5' | -59.8 | NC_001491.2 | + | 145754 | 0.69 | 0.517042 |
Target: 5'- uGCuGCUGCUGCcgCCGCCCCgguaGCcUGg -3' miRNA: 3'- -CGuCGACGACGa-GGUGGGGg---UGcACa -5' |
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2736 | 5' | -59.8 | NC_001491.2 | + | 81110 | 0.7 | 0.457924 |
Target: 5'- gGCGGCUGCguagGCggcggugaagcCCACCCCCaaguccacguuagcACGUGg -3' miRNA: 3'- -CGUCGACGa---CGa----------GGUGGGGG--------------UGCACa -5' |
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2736 | 5' | -59.8 | NC_001491.2 | + | 39163 | 0.71 | 0.43371 |
Target: 5'- aGCAGC-GCUGCcCaCGCCCCCAgagcauuaucCGUGg -3' miRNA: 3'- -CGUCGaCGACGaG-GUGGGGGU----------GCACa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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