miRNA display CGI


Results 1 - 15 of 15 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27360 3' -51 NC_005857.1 + 12200 0.66 0.887135
Target:  5'- -gUGCCGGUGACGGcucGCUGGggGuACg- -3'
miRNA:   3'- aaACGGUCGCUGCU---UGACUuaC-UGgu -5'
27360 3' -51 NC_005857.1 + 23765 0.66 0.879229
Target:  5'- --cGCCAGCGucaauaagaaaGCGGaugcgacagcGCUGAAcgcgcUGACCAc -3'
miRNA:   3'- aaaCGGUCGC-----------UGCU----------UGACUU-----ACUGGU- -5'
27360 3' -51 NC_005857.1 + 20138 0.66 0.879229
Target:  5'- --cGCCAGCGucaauaagaaaGCGGaugcgacagcGCUGAAcgcgcUGACCAc -3'
miRNA:   3'- aaaCGGUCGC-----------UGCU----------UGACUU-----ACUGGU- -5'
27360 3' -51 NC_005857.1 + 11243 0.66 0.871041
Target:  5'- gUUGCCgcAGCGuuuUGAACUGGucGACCu -3'
miRNA:   3'- aAACGG--UCGCu--GCUUGACUuaCUGGu -5'
27360 3' -51 NC_005857.1 + 3668 0.66 0.870207
Target:  5'- --cGCCAGgGAUGAuuugugcGCUGuc-GACCAu -3'
miRNA:   3'- aaaCGGUCgCUGCU-------UGACuuaCUGGU- -5'
27360 3' -51 NC_005857.1 + 31413 0.67 0.84486
Target:  5'- -cUGCCAGCGcauuuCGAGCUG----GCCAu -3'
miRNA:   3'- aaACGGUCGCu----GCUUGACuuacUGGU- -5'
27360 3' -51 NC_005857.1 + 47623 0.67 0.84486
Target:  5'- --cGCCAGUGACGGuCUGAAUcugGAUUc -3'
miRNA:   3'- aaaCGGUCGCUGCUuGACUUA---CUGGu -5'
27360 3' -51 NC_005857.1 + 36347 0.68 0.796419
Target:  5'- --cGCUGGCG-CGuACUGAA-GACCAu -3'
miRNA:   3'- aaaCGGUCGCuGCuUGACUUaCUGGU- -5'
27360 3' -51 NC_005857.1 + 34005 0.68 0.796419
Target:  5'- cUUGCCAaUGACGAuCUGGAUGAaCUg -3'
miRNA:   3'- aAACGGUcGCUGCUuGACUUACU-GGu -5'
27360 3' -51 NC_005857.1 + 42770 0.68 0.78611
Target:  5'- --gGCCAGCG-CGAACUc---GGCCAa -3'
miRNA:   3'- aaaCGGUCGCuGCUUGAcuuaCUGGU- -5'
27360 3' -51 NC_005857.1 + 20616 0.69 0.720989
Target:  5'- -cUGUgGGCGAUGAugcCUGAG-GACCAg -3'
miRNA:   3'- aaACGgUCGCUGCUu--GACUUaCUGGU- -5'
27360 3' -51 NC_005857.1 + 41118 0.69 0.717616
Target:  5'- --cGCCAGCGguagaaacgccgugGCGAgcaGCUGcuGUGGCCAg -3'
miRNA:   3'- aaaCGGUCGC--------------UGCU---UGACu-UACUGGU- -5'
27360 3' -51 NC_005857.1 + 6719 0.71 0.594425
Target:  5'- --gGUCAGUGAUGcauacCUGAAUGGCCAc -3'
miRNA:   3'- aaaCGGUCGCUGCuu---GACUUACUGGU- -5'
27360 3' -51 NC_005857.1 + 17744 0.71 0.570288
Target:  5'- --gGCCAGCGACGAuaucGgUGAGuauuacgacaagcUGACCGa -3'
miRNA:   3'- aaaCGGUCGCUGCU----UgACUU-------------ACUGGU- -5'
27360 3' -51 NC_005857.1 + 5042 1.07 0.002814
Target:  5'- gUUUGCCAGCGACGAACUGAAUGACCAg -3'
miRNA:   3'- -AAACGGUCGCUGCUUGACUUACUGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.