Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27362 | 3' | -49.4 | NC_005857.1 | + | 47028 | 0.66 | 0.936603 |
Target: 5'- gUG-AUUUCAUUGAcgGUAUGugGCCAUg -3' miRNA: 3'- gACuUGAAGUGACU--CGUACugUGGUA- -5' |
|||||||
27362 | 3' | -49.4 | NC_005857.1 | + | 43465 | 0.66 | 0.918437 |
Target: 5'- cCUGAccACaUCGCUG-GCAUGuguuCGCCAg -3' miRNA: 3'- -GACU--UGaAGUGACuCGUACu---GUGGUa -5' |
|||||||
27362 | 3' | -49.4 | NC_005857.1 | + | 45471 | 0.67 | 0.904758 |
Target: 5'- uUGAAaaugggCGCUGcAGCAUGAguCACCAUg -3' miRNA: 3'- gACUUgaa---GUGAC-UCGUACU--GUGGUA- -5' |
|||||||
27362 | 3' | -49.4 | NC_005857.1 | + | 6542 | 1.07 | 0.004083 |
Target: 5'- gCUGAACUUCACUGAGCAUGACACCAUg -3' miRNA: 3'- -GACUUGAAGUGACUCGUACUGUGGUA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home