Results 1 - 8 of 8 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 27364 | 5' | -52.4 | NC_005857.1 | + | 12196 | 0.66 | 0.858291 |
|
Target: 5'- aCGCGuGCCGgUGAcggcucgcugGGGGUAcgcgcggucgGGGGCGCa -3' miRNA: 3'- -GCGC-UGGCgACUa---------CUCUAU----------UCUCGCG- -5' |
|||||||
| 27364 | 5' | -52.4 | NC_005857.1 | + | 20134 | 0.66 | 0.822529 |
|
Target: 5'- aGCGuacccuCUGCUGAauccacccGGGAUGucAGGGCGCu -3' miRNA: 3'- gCGCu-----GGCGACUa-------CUCUAU--UCUCGCG- -5' |
|||||||
| 27364 | 5' | -52.4 | NC_005857.1 | + | 23760 | 0.66 | 0.822529 |
|
Target: 5'- aGCGuacccuCUGCUGAauccacccGGGAUGucAGGGCGCu -3' miRNA: 3'- gCGCu-----GGCGACUa-------CUCUAU--UCUCGCG- -5' |
|||||||
| 27364 | 5' | -52.4 | NC_005857.1 | + | 48571 | 0.66 | 0.821589 |
|
Target: 5'- uGCGACCacggucGCacgGGUGAGuuaauccAUAAGuAGCGCa -3' miRNA: 3'- gCGCUGG------CGa--CUACUC-------UAUUC-UCGCG- -5' |
|||||||
| 27364 | 5' | -52.4 | NC_005857.1 | + | 17511 | 0.68 | 0.762847 |
|
Target: 5'- gGCGugCaGCUGAacUGGGAguucccggagGGGAGCGg -3' miRNA: 3'- gCGCugG-CGACU--ACUCUa---------UUCUCGCg -5' |
|||||||
| 27364 | 5' | -52.4 | NC_005857.1 | + | 36670 | 0.68 | 0.716825 |
|
Target: 5'- uGCGuCCGCUGAUgcuacaggcaacacGAGGcguuucuGGGCGCa -3' miRNA: 3'- gCGCuGGCGACUA--------------CUCUauu----CUCGCG- -5' |
|||||||
| 27364 | 5' | -52.4 | NC_005857.1 | + | 17233 | 0.72 | 0.509382 |
|
Target: 5'- gGCGGCUGCUGAcucccuggaGGGAUAAcgcuuaucGGGCGCu -3' miRNA: 3'- gCGCUGGCGACUa--------CUCUAUU--------CUCGCG- -5' |
|||||||
| 27364 | 5' | -52.4 | NC_005857.1 | + | 9377 | 1.01 | 0.007216 |
|
Target: 5'- gCGCGACCGCUGAUGAGAUGAaAGCGCu -3' miRNA: 3'- -GCGCUGGCGACUACUCUAUUcUCGCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home