miRNA display CGI

Results 1 - 10 of 10 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
27365	5'	-51.7	NC_005857.1	+	15161	0.66	0.833112
	Target:  5'- ---aCAGGGcuaucccguAGGGCUUCUUUACGGCa -3' miRNA:   3'- aacaGUCCCu--------UUUUGGAGAGGUGCCG- -5'
27365	5'	-51.7	NC_005857.1	+	27360	0.67	0.810155
	Target:  5'- aUGUCAGGGAAuagcauuacuuuGCCUgUUUugGGg -3' miRNA:   3'- aACAGUCCCUUuu----------UGGAgAGGugCCg -5'
27365	5'	-51.7	NC_005857.1	+	47800	0.67	0.794193
	Target:  5'- cUG-CAGGGGGAAguacggcacgcaGCUgcgCCACGGCa -3' miRNA:   3'- aACaGUCCCUUUU------------UGGagaGGUGCCG- -5'
27365	5'	-51.7	NC_005857.1	+	3325	0.67	0.788084
	Target:  5'- gUGUgGGGGGAuuuuguagaggcggcAAACCUCUuCCACGc- -3' miRNA:   3'- aACAgUCCCUU---------------UUUGGAGA-GGUGCcg -5'
27365	5'	-51.7	NC_005857.1	+	38937	0.67	0.783976
	Target:  5'- uUUGcCAGGGc-AAGCCcaaUCUCCagcgACGGCa -3' miRNA:   3'- -AACaGUCCCuuUUUGG---AGAGG----UGCCG- -5'
27365	5'	-51.7	NC_005857.1	+	19076	0.68	0.773588
	Target:  5'- cUGUCGcuGAuGAACUgaguuccaUCUCCACGGCa -3' miRNA:   3'- aACAGUccCUuUUUGG--------AGAGGUGCCG- -5'
27365	5'	-51.7	NC_005857.1	+	28215	0.7	0.663127
	Target:  5'- -cG-CAGGGAAccGCCUCUauguaUCAUGGCu -3' miRNA:   3'- aaCaGUCCCUUuuUGGAGA-----GGUGCCG- -5'
27365	5'	-51.7	NC_005857.1	+	35977	0.7	0.656276
	Target:  5'- --aUCAGGGAAuuguAGCCUCagcugcauggugacgUCCuCGGCg -3' miRNA:   3'- aacAGUCCCUUu---UUGGAG---------------AGGuGCCG- -5'
27365	5'	-51.7	NC_005857.1	+	21243	0.76	0.339345
	Target:  5'- ----aGGGGAAAGACCUCUCCAgccagggGGCa -3' miRNA:   3'- aacagUCCCUUUUUGGAGAGGUg------CCG- -5'
27365	5'	-51.7	NC_005857.1	+	9912	1.1	0.001676
	Target:  5'- uUUGUCAGGGAAAAACCUCUCCACGGCu -3' miRNA:   3'- -AACAGUCCCUUUUUGGAGAGGUGCCG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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