Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27368 | 3' | -49.2 | NC_005857.1 | + | 2597 | 0.67 | 0.941729 |
Target: 5'- cGCAAGcgccguUUCCgGCGUGaucaUGAcACCGGCu -3' miRNA: 3'- -UGUUU------AAGGgCGCAUa---GCUaUGGCCG- -5' |
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27368 | 3' | -49.2 | NC_005857.1 | + | 34529 | 0.67 | 0.936421 |
Target: 5'- -----aUCCCG-GUggCGGUACCGGa -3' miRNA: 3'- uguuuaAGGGCgCAuaGCUAUGGCCg -5' |
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27368 | 3' | -49.2 | NC_005857.1 | + | 17656 | 0.67 | 0.930813 |
Target: 5'- uGCAGAUUgCgGCGaUGUucUGGUACCGcGCg -3' miRNA: 3'- -UGUUUAAgGgCGC-AUA--GCUAUGGC-CG- -5' |
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27368 | 3' | -49.2 | NC_005857.1 | + | 46110 | 0.67 | 0.930813 |
Target: 5'- gGCAcuUUgUCGCGUAUCcagGCUGGCc -3' miRNA: 3'- -UGUuuAAgGGCGCAUAGcuaUGGCCG- -5' |
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27368 | 3' | -49.2 | NC_005857.1 | + | 7741 | 0.67 | 0.930813 |
Target: 5'- cGCAuGUgcugCCCGgucgaCGUuucGUCGAaGCCGGCa -3' miRNA: 3'- -UGUuUAa---GGGC-----GCA---UAGCUaUGGCCG- -5' |
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27368 | 3' | -49.2 | NC_005857.1 | + | 40201 | 0.67 | 0.930236 |
Target: 5'- cCGGGUUCCUGCGUAccucaacUCuGGUcuACCGGg -3' miRNA: 3'- uGUUUAAGGGCGCAU-------AG-CUA--UGGCCg -5' |
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27368 | 3' | -49.2 | NC_005857.1 | + | 13489 | 0.68 | 0.912195 |
Target: 5'- gGCAGAcaUCCUGCG-AUgGGUcaucaACCGGCu -3' miRNA: 3'- -UGUUUa-AGGGCGCaUAgCUA-----UGGCCG- -5' |
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27368 | 3' | -49.2 | NC_005857.1 | + | 10550 | 0.68 | 0.890911 |
Target: 5'- gGCGAA--CCgGCagaUGUCGAUAUCGGCc -3' miRNA: 3'- -UGUUUaaGGgCGc--AUAGCUAUGGCCG- -5' |
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27368 | 3' | -49.2 | NC_005857.1 | + | 32195 | 0.69 | 0.858579 |
Target: 5'- cCAGGUUgCCCGUGaGUUGGUACaagaGGCc -3' miRNA: 3'- uGUUUAA-GGGCGCaUAGCUAUGg---CCG- -5' |
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27368 | 3' | -49.2 | NC_005857.1 | + | 18586 | 0.69 | 0.848947 |
Target: 5'- aACGGGgacgCCCGCGUGgagUGGUcaaauccGCUGGCg -3' miRNA: 3'- -UGUUUaa--GGGCGCAUa--GCUA-------UGGCCG- -5' |
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27368 | 3' | -49.2 | NC_005857.1 | + | 1722 | 0.71 | 0.792532 |
Target: 5'- uCAAuUUCCCGCGUAaauaaCGuAUcCCGGCg -3' miRNA: 3'- uGUUuAAGGGCGCAUa----GC-UAuGGCCG- -5' |
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27368 | 3' | -49.2 | NC_005857.1 | + | 17100 | 1.14 | 0.002128 |
Target: 5'- gACAAAUUCCCGCGUAUCGAUACCGGCg -3' miRNA: 3'- -UGUUUAAGGGCGCAUAGCUAUGGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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