miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27368 5' -52.1 NC_005857.1 + 25648 0.66 0.871762
Target:  5'- uGACCAGCaCaCCGAUAGuuGCuGgcAUCCu -3'
miRNA:   3'- gCUGGUCGcG-GGCUAUU--CG-CaaUAGG- -5'
27368 5' -52.1 NC_005857.1 + 3040 0.66 0.855189
Target:  5'- -cGCCAGauucaGCCCGAguacgucGGCGUUcGUCUg -3'
miRNA:   3'- gcUGGUCg----CGGGCUau-----UCGCAA-UAGG- -5'
27368 5' -52.1 NC_005857.1 + 31412 0.67 0.82761
Target:  5'- -uGCCAGCGCauuuCGAgcuggccaucaaUAaacuggaGGCGUUAUCCa -3'
miRNA:   3'- gcUGGUCGCGg---GCU------------AU-------UCGCAAUAGG- -5'
27368 5' -52.1 NC_005857.1 + 35108 0.67 0.819206
Target:  5'- gCGACCGGCcaCgCGGUAAGCGUa---- -3'
miRNA:   3'- -GCUGGUCGc-GgGCUAUUCGCAauagg -5'
27368 5' -52.1 NC_005857.1 + 9651 0.67 0.819206
Target:  5'- -cGCCAGCGUUCGGgucgcauccggGAGCGUcguUCCu -3'
miRNA:   3'- gcUGGUCGCGGGCUa----------UUCGCAau-AGG- -5'
27368 5' -52.1 NC_005857.1 + 47252 0.67 0.799948
Target:  5'- cCGGuuCCuGCGCCUGuu-GGCGUcggGUCCu -3'
miRNA:   3'- -GCU--GGuCGCGGGCuauUCGCAa--UAGG- -5'
27368 5' -52.1 NC_005857.1 + 47611 0.73 0.485449
Target:  5'- aCGACCAGCGCUCGcc-AGUGacgGUCUg -3'
miRNA:   3'- -GCUGGUCGCGGGCuauUCGCaa-UAGG- -5'
27368 5' -52.1 NC_005857.1 + 8881 0.74 0.433762
Target:  5'- --uCCAGCGuCCCGAUGgaguGGCGUuucaccuUAUCCa -3'
miRNA:   3'- gcuGGUCGC-GGGCUAU----UCGCA-------AUAGG- -5'
27368 5' -52.1 NC_005857.1 + 21064 0.74 0.415337
Target:  5'- gGuCCGGCuCCCGAUGcuacugauGGUGUUGUCCu -3'
miRNA:   3'- gCuGGUCGcGGGCUAU--------UCGCAAUAGG- -5'
27368 5' -52.1 NC_005857.1 + 41137 0.77 0.303045
Target:  5'- uCGGCCAGCGCaCGAUGAGCG----CCa -3'
miRNA:   3'- -GCUGGUCGCGgGCUAUUCGCaauaGG- -5'
27368 5' -52.1 NC_005857.1 + 11967 0.78 0.246379
Target:  5'- -aACCAGCGCCUGAgcAGCcaUAUCCa -3'
miRNA:   3'- gcUGGUCGCGGGCUauUCGcaAUAGG- -5'
27368 5' -52.1 NC_005857.1 + 17134 1.12 0.001444
Target:  5'- uCGACCAGCGCCCGAUAAGCGUUAUCCc -3'
miRNA:   3'- -GCUGGUCGCGGGCUAUUCGCAAUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.