miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2737 3' -50.5 NC_001491.2 + 124904 0.66 0.994297
Target:  5'- cCGGUcGAgGGGGUGGUggccGGAG-AGGUg -3'
miRNA:   3'- -GUCAuCUgCUCCAUCAa---UCUCgUCCG- -5'
2737 3' -50.5 NC_001491.2 + 39776 0.66 0.993388
Target:  5'- gGGcGGAUGAGGUGG-UGGAGUuuGGa -3'
miRNA:   3'- gUCaUCUGCUCCAUCaAUCUCGu-CCg -5'
2737 3' -50.5 NC_001491.2 + 116266 0.67 0.988539
Target:  5'- cCAGccUGGuCGGGGggauGUUGGGGgAGGCc -3'
miRNA:   3'- -GUC--AUCuGCUCCau--CAAUCUCgUCCG- -5'
2737 3' -50.5 NC_001491.2 + 144487 0.67 0.988539
Target:  5'- cCGGUGG-CGGGGUuccgc-GGCGGGCg -3'
miRNA:   3'- -GUCAUCuGCUCCAucaaucUCGUCCG- -5'
2737 3' -50.5 NC_001491.2 + 139244 0.67 0.985254
Target:  5'- gCGGUAGGgGAGGccgagcgGGggAGAGC-GGUa -3'
miRNA:   3'- -GUCAUCUgCUCCa------UCaaUCUCGuCCG- -5'
2737 3' -50.5 NC_001491.2 + 139190 0.67 0.985254
Target:  5'- gCGGUAGGgGAGGccgagcgGGggAGAGC-GGUa -3'
miRNA:   3'- -GUCAUCUgCUCCa------UCaaUCUCGuCCG- -5'
2737 3' -50.5 NC_001491.2 + 139136 0.67 0.985254
Target:  5'- gCGGUAGGgGAGGccgagcgGGggAGAGC-GGUa -3'
miRNA:   3'- -GUCAUCUgCUCCa------UCaaUCUCGuCCG- -5'
2737 3' -50.5 NC_001491.2 + 139082 0.67 0.985254
Target:  5'- gCGGUAGGgGAGGccgagcgGGggAGAGC-GGUa -3'
miRNA:   3'- -GUCAUCUgCUCCa------UCaaUCUCGuCCG- -5'
2737 3' -50.5 NC_001491.2 + 139028 0.67 0.985254
Target:  5'- gCGGUAGGgGAGGccgagcgGGggAGAGC-GGUa -3'
miRNA:   3'- -GUCAUCUgCUCCa------UCaaUCUCGuCCG- -5'
2737 3' -50.5 NC_001491.2 + 139324 0.67 0.985254
Target:  5'- gCGGUAGGgGAGGccgagcgGGggAGAGC-GGUa -3'
miRNA:   3'- -GUCAUCUgCUCCa------UCaaUCUCGuCCG- -5'
2737 3' -50.5 NC_001491.2 + 139417 0.67 0.983363
Target:  5'- uGGUGGGUGAGGUGGUUGuGGUAGuCa -3'
miRNA:   3'- gUCAUCUGCUCCAUCAAUcUCGUCcG- -5'
2737 3' -50.5 NC_001491.2 + 141188 0.68 0.97904
Target:  5'- aAGaAGACGAGGccagcGGggAGAGCAGcGUu -3'
miRNA:   3'- gUCaUCUGCUCCa----UCaaUCUCGUC-CG- -5'
2737 3' -50.5 NC_001491.2 + 129605 0.68 0.971069
Target:  5'- -cGUAGGCGuAGuuGUGGUUGGGGUugAGGUa -3'
miRNA:   3'- guCAUCUGC-UC--CAUCAAUCUCG--UCCG- -5'
2737 3' -50.5 NC_001491.2 + 147281 0.69 0.96149
Target:  5'- aGGUGGGcCGGGG-AGgcggccgccugaggGGAGCGGGCc -3'
miRNA:   3'- gUCAUCU-GCUCCaUCaa------------UCUCGUCCG- -5'
2737 3' -50.5 NC_001491.2 + 91949 0.69 0.961125
Target:  5'- cCAGUaAGucUGGGGUGGcagccucAGAGCGGGCg -3'
miRNA:   3'- -GUCA-UCu-GCUCCAUCaa-----UCUCGUCCG- -5'
2737 3' -50.5 NC_001491.2 + 90982 0.7 0.949035
Target:  5'- -cGUAGAUagucgucaagGGGGUGGUgggaaaUAGGGCAGGg -3'
miRNA:   3'- guCAUCUG----------CUCCAUCA------AUCUCGUCCg -5'
2737 3' -50.5 NC_001491.2 + 138075 0.7 0.934677
Target:  5'- ---aAGACGAGGUGGggcGGGUuGGCa -3'
miRNA:   3'- gucaUCUGCUCCAUCaauCUCGuCCG- -5'
2737 3' -50.5 NC_001491.2 + 140242 0.71 0.923811
Target:  5'- gCGG-GGACGGGGacg--GGGGCGGGCg -3'
miRNA:   3'- -GUCaUCUGCUCCaucaaUCUCGUCCG- -5'
2737 3' -50.5 NC_001491.2 + 61962 0.73 0.846014
Target:  5'- aCGGUGGAUccGGUAGgcgguGGGCAGGUg -3'
miRNA:   3'- -GUCAUCUGcuCCAUCaau--CUCGUCCG- -5'
2737 3' -50.5 NC_001491.2 + 107137 0.74 0.80174
Target:  5'- uUAGUgGGugGGGGUGGccagUAGAGguGGUc -3'
miRNA:   3'- -GUCA-UCugCUCCAUCa---AUCUCguCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.