miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2737 5' -57.4 NC_001491.2 + 41646 0.66 0.856312
Target:  5'- aUGCCUcgUCCCAGCUAacuuCUGUcGCCg -3'
miRNA:   3'- gACGGGugAGGGUCGGU----GAUAuCGGg -5'
2737 5' -57.4 NC_001491.2 + 9170 0.66 0.856312
Target:  5'- uUGCCgGCgUCUauaggCAGCCAgUAU-GCCCa -3'
miRNA:   3'- gACGGgUG-AGG-----GUCGGUgAUAuCGGG- -5'
2737 5' -57.4 NC_001491.2 + 78279 0.66 0.856312
Target:  5'- uCUGCaCguUUCuggCCAGCUGCUGUauAGCCCu -3'
miRNA:   3'- -GACG-GguGAG---GGUCGGUGAUA--UCGGG- -5'
2737 5' -57.4 NC_001491.2 + 80059 0.66 0.848464
Target:  5'- -aGUCCAC-CCCAuCCACccAUAGCUCc -3'
miRNA:   3'- gaCGGGUGaGGGUcGGUGa-UAUCGGG- -5'
2737 5' -57.4 NC_001491.2 + 141829 0.66 0.848464
Target:  5'- -aGCCCAgcUCCGGCgACcccGGCCCa -3'
miRNA:   3'- gaCGGGUgaGGGUCGgUGauaUCGGG- -5'
2737 5' -57.4 NC_001491.2 + 39157 0.66 0.832189
Target:  5'- gCUGCCCACgccCCCAGagCAUUauccGUGGUCa -3'
miRNA:   3'- -GACGGGUGa--GGGUCg-GUGA----UAUCGGg -5'
2737 5' -57.4 NC_001491.2 + 148607 0.66 0.832189
Target:  5'- -gGCCCcgAgUCCCcaucgguuGGCCGCgcgGUGGCUCu -3'
miRNA:   3'- gaCGGG--UgAGGG--------UCGGUGa--UAUCGGG- -5'
2737 5' -57.4 NC_001491.2 + 140082 0.66 0.832189
Target:  5'- -cGCCCGCggaggCCUGGCCGCgcGUGuaCCg -3'
miRNA:   3'- gaCGGGUGa----GGGUCGGUGa-UAUcgGG- -5'
2737 5' -57.4 NC_001491.2 + 134029 0.66 0.832189
Target:  5'- -aGCCguCUCCguuCGGCCGCcgAUGcGCCCc -3'
miRNA:   3'- gaCGGguGAGG---GUCGGUGa-UAU-CGGG- -5'
2737 5' -57.4 NC_001491.2 + 57959 0.66 0.823775
Target:  5'- gCUGgCCAUg-CCGGCCACccUGGCUCu -3'
miRNA:   3'- -GACgGGUGagGGUCGGUGauAUCGGG- -5'
2737 5' -57.4 NC_001491.2 + 116532 0.66 0.821217
Target:  5'- cCUGCCCucccgaggcgcuguGCUccaaCCCGGCCggGCUGgagacggcGGCCCu -3'
miRNA:   3'- -GACGGG--------------UGA----GGGUCGG--UGAUa-------UCGGG- -5'
2737 5' -57.4 NC_001491.2 + 139688 0.66 0.821217
Target:  5'- -cGCCCGCggccgcaagcucccUCuCCAGCUGCccucGGCCCa -3'
miRNA:   3'- gaCGGGUG--------------AG-GGUCGGUGaua-UCGGG- -5'
2737 5' -57.4 NC_001491.2 + 146159 0.66 0.815188
Target:  5'- -gGCCaCGCUCCCGGUgAUgaaGGaCCCg -3'
miRNA:   3'- gaCGG-GUGAGGGUCGgUGauaUC-GGG- -5'
2737 5' -57.4 NC_001491.2 + 112967 0.67 0.806434
Target:  5'- -gGCUCuCUCUCGGgCGCg--GGCCCg -3'
miRNA:   3'- gaCGGGuGAGGGUCgGUGauaUCGGG- -5'
2737 5' -57.4 NC_001491.2 + 1262 0.67 0.806434
Target:  5'- -gGCUCuCUCUCGGgCGCg--GGCCCg -3'
miRNA:   3'- gaCGGGuGAGGGUCgGUGauaUCGGG- -5'
2737 5' -57.4 NC_001491.2 + 116984 0.67 0.806434
Target:  5'- cCUGCCaCACg--CGGCCGCcucgGUGGCCa -3'
miRNA:   3'- -GACGG-GUGaggGUCGGUGa---UAUCGGg -5'
2737 5' -57.4 NC_001491.2 + 94956 0.67 0.806434
Target:  5'- -gGCUC---CCCAGCCAUggUGUAGUCCg -3'
miRNA:   3'- gaCGGGugaGGGUCGGUG--AUAUCGGG- -5'
2737 5' -57.4 NC_001491.2 + 86605 0.67 0.806434
Target:  5'- -gGCCaCGCgaguuUCCgAGCCGCgcUAGCUCg -3'
miRNA:   3'- gaCGG-GUG-----AGGgUCGGUGauAUCGGG- -5'
2737 5' -57.4 NC_001491.2 + 41238 0.67 0.806434
Target:  5'- -gGCCuCGCUCCgAGCgGCUucGGCUUg -3'
miRNA:   3'- gaCGG-GUGAGGgUCGgUGAuaUCGGG- -5'
2737 5' -57.4 NC_001491.2 + 3232 0.67 0.797523
Target:  5'- -cGCCCGCuUCCUAGC-GCguacGCCCu -3'
miRNA:   3'- gaCGGGUG-AGGGUCGgUGauauCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.